May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L35 - S16
UniProt: Q5SKU1 - Q5SJH3
Length: 153
Sequences: 1169
Seq/Len: 7.85
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d8 3v2eP 3v2f8Contact Map
2j002j00P 2j018 2j02P 2j038Contact Map
4juw4juwP 4jux8Contact Map
4kix4kix3 4kiyP 4kiz3 4kj0P 4kj13 4kj2P 4kj33 4kj4PContact Map
4kj54kj53 4kj6P 4kj73 4kj8P 4kj93 4kjaP 4kjb3 4kjcPContact Map
3uyd3uydS 3uye8 3uyfS 3uyg8Contact Map
4gd13r8s3 3r8t3 4gd1P 4gd2PContact Map
3knh3knhP 3kni8 3knjP 3knk8Contact Map
3ohc3ohcP 3ohdP 3ohj8 3ohk8Contact Map
3f1e3f1eP 3f1f8 3f1gP 3f1h8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_R 33_I 0.78 0.00
30_R 20_V 0.78 0.00
63_P 11_S 0.73 0.00
6_T 60_L 0.68 0.00
17_T 68_D 0.66 0.00
54_E 34_E 0.65 0.00
11_K 5_R 0.64 0.00
18_A 44_T 0.64 0.00
50_L 58_Y 0.62 0.00
38_G 36_I 0.61 0.00
4_M 5_R 0.61 0.00
40_E 72_R 0.60 0.00
7_H 72_R 0.60 0.00
7_H 53_V 0.60 0.00
19_S 42_R 0.58 0.00
53_P 73_L 0.57 0.00
47_K 65_Q 0.57 0.00
23_V 25_R 0.57 0.00
46_R 27_K 0.56 0.00
15_K 14_N 0.55 0.00
61_L 58_Y 0.55 0.00
9_G 81_R 0.55 0.00
58_I 80_F 0.54 0.00
34_W 2_V 0.54 0.00
7_H 73_L 0.54 0.00
23_V 1_M 0.54 0.00
19_S 24_A 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3379 seconds.