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OPENSEQ.org
L35 - S12
UniProt: Q5SKU1 - Q5SHN3
Length: 197
Sequences: 757
Seq/Len: 4.00
I_Prob: 0.93
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2d8 3v2eL 3v2f8Contact Map
2j002j00L 2j018 2j02L 2j038Contact Map
4juw4juwL 4jux8Contact Map
4kix4kix3 4kiyL 4kiz3 4kj0L 4kj13 4kj2L 4kj33 4kj4LContact Map
4kj54kj53 4kj6L 4kj73 4kj8L 4kj93 4kjaL 4kjb3 4kjcLContact Map
3uyd3uydO 3uye8 3uyfO 3uyg8Contact Map
4gd13r8s3 3r8t3 4gd1L 4gd2LContact Map
3ohc3ohcL 3ohdL 3ohj8 3ohk8Contact Map
3knh3knhL 3kni8 3knjL 3knk8Contact Map
3f1e3f1eL 3f1f8 3f1gL 3f1h8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
63_P 79_V 1.69 0.93
45_G 30_R 1.40 0.82
25_M 30_R 1.32 0.77
33_N 52_V 1.27 0.73
64_Y 79_V 1.14 0.62
45_G 5_N 1.10 0.57
33_N 38_R 1.07 0.54
9_G 65_A 1.06 0.53
14_V 116_K 1.05 0.52
41_I 27_A 1.04 0.50
32_L 58_T 1.00 0.46
40_E 113_S 0.98 0.43
30_R 105_A 0.97 0.42
28_G 97_I 0.90 0.34
21_K 53_A 0.89 0.33
57_R 27_A 0.89 0.33
52_K 121_K 0.88 0.33
45_G 79_V 0.88 0.32
26_K 40_V 0.88 0.32
61_L 104_A 0.87 0.31
29_K 14_K 0.85 0.29
52_K 21_V 0.84 0.28
10_A 104_A 0.82 0.26
7_H 20_K 0.81 0.25
44_K 49_L 0.81 0.25
54_E 36_V 0.80 0.24
17_T 101_V 0.80 0.24
38_G 35_T 0.80 0.24
63_P 82_I 0.79 0.23
8_K 19_S 0.78 0.22
21_K 68_P 0.78 0.22
34_W 5_N 0.78 0.22
61_L 30_R 0.77 0.21
21_K 97_I 0.77 0.21
49_V 82_I 0.77 0.21
21_K 60_G 0.76 0.21
59_K 119_T 0.76 0.20
37_S 101_V 0.76 0.20
40_E 52_V 0.76 0.20
9_G 58_T 0.75 0.20
30_R 108_K 0.75 0.19
56_E 16_R 0.75 0.19
47_K 113_S 0.74 0.19
43_Q 21_V 0.74 0.18
30_R 18_K 0.73 0.18
50_L 102_Y 0.73 0.18
7_H 111_K 0.73 0.18
29_K 15_V 0.72 0.17
58_I 58_T 0.71 0.17
63_P 96_H 0.71 0.17
38_G 15_V 0.71 0.16
29_K 29_F 0.71 0.16
54_E 35_T 0.71 0.16
46_R 17_K 0.71 0.16
23_V 58_T 0.71 0.16
3_K 69_G 0.71 0.16
7_H 35_T 0.70 0.16
47_K 13_E 0.70 0.16
20_G 53_A 0.70 0.16
28_G 26_G 0.70 0.15
47_K 8_V 0.70 0.15
62_L 4_I 0.70 0.15
10_A 116_K 0.69 0.15
39_K 122_P 0.68 0.14
47_K 104_A 0.68 0.14
35_Q 52_V 0.68 0.14
35_Q 29_F 0.68 0.14
60_L 119_T 0.68 0.14
39_K 121_K 0.67 0.13
56_E 97_I 0.67 0.13
62_L 26_G 0.66 0.13
40_E 98_V 0.66 0.13
45_G 49_L 0.66 0.13
14_V 9_R 0.66 0.13
41_I 34_C 0.66 0.12
19_S 123_K 0.66 0.12
61_L 82_I 0.66 0.12
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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