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OPENSEQ.org
L35 - S09
UniProt: Q5SKU1 - P80374
Length: 193
Sequences: 1065
Seq/Len: 5.67
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2d8 3v2eI 3v2f8Contact Map
2j002j00I 2j018 2j02I 2j038Contact Map
4juw4juwI 4jux8Contact Map
4kix4kix3 4kiyI 4kiz3 4kj0I 4kj13 4kj2I 4kj33 4kj4IContact Map
4kj54kj53 4kj6I 4kj73 4kj8I 4kj93 4kjaI 4kjb3 4kjcIContact Map
3uyd3uydL 3uye8 3uyfL 3uyg8Contact Map
4gd13r8s3 3r8t3 4gd1I 4gd2IContact Map
3ohc3ohcI 3ohdI 3ohj8 3ohk8Contact Map
3knh3knhI 3kni8 3knjI 3knk8Contact Map
3ohy3ohyI 3ohz8 3oi0I 3oi18Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_T 13_A 0.91 0.01
34_W 122_A 0.84 0.01
4_M 94_A 0.83 0.01
4_M 121_R 0.83 0.01
27_T 81_I 0.80 0.01
7_H 3_Q 0.75 0.01
22_V 77_I 0.73 0.01
22_V 112_K 0.70 0.00
4_M 53_V 0.69 0.00
32_L 12_E 0.69 0.00
45_G 75_D 0.67 0.00
28_G 97_K 0.67 0.00
45_G 125_Y 0.67 0.00
33_N 109_V 0.66 0.00
40_E 12_E 0.66 0.00
59_K 34_N 0.65 0.00
1_M 13_A 0.64 0.00
49_V 19_L 0.64 0.00
33_N 126_S 0.64 0.00
7_H 117_H 0.64 0.00
9_G 38_Q 0.63 0.00
26_K 117_H 0.62 0.00
54_E 47_L 0.62 0.00
44_K 68_G 0.61 0.00
40_E 82_A 0.61 0.00
62_L 96_L 0.60 0.00
34_W 37_F 0.59 0.00
17_T 16_R 0.59 0.00
33_N 118_K 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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