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OPENSEQ.org
L31 - S13
UniProt: Q5SJE1 - P80377
Length: 197
Sequences: 1101
Seq/Len: 5.89
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2d4 3v2eM 3v2f4Contact Map
2j002j00M 2j014 2j02M 2j034Contact Map
4juw4juwM 4jux4Contact Map
3uyd3uydP 3uye4 3uyfP 3uyg4Contact Map
3knh3knhM 3kni4 3knjM 3knk4Contact Map
3ohc3ohcM 3ohdM 3ohj4 3ohk4Contact Map
3ohy3ohyM 3ohz4 3oi0M 3oi14Contact Map
3f1e3f1eM 3f1f4 3f1gM 3f1h4Contact Map
3v223v22M 3v234 3v24M 3v254Contact Map
3uz63uz6P 3uz7P 3uz84 3uz94Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
49_F 65_K 0.90 0.01
43_Y 54_V 0.89 0.01
49_F 84_I 0.89 0.01
35_V 11_R 0.86 0.01
33_V 7_V 0.82 0.01
53_E 98_V 0.80 0.01
55_R 80_R 0.79 0.01
42_F 34_L 0.77 0.01
62_R 69_E 0.76 0.01
11_P 59_Y 0.71 0.00
58_R 75_A 0.70 0.00
4_G 23_Y 0.69 0.00
25_Y 30_A 0.69 0.00
63_Y 105_T 0.69 0.00
25_Y 105_T 0.68 0.00
62_R 54_V 0.68 0.00
50_V 56_L 0.67 0.00
63_Y 85_G 0.67 0.00
50_V 50_E 0.66 0.00
60_Q 54_V 0.66 0.00
21_V 32_E 0.65 0.00
50_V 86_C 0.65 0.00
56_V 86_C 0.65 0.00
32_Y 50_E 0.65 0.00
62_R 11_R 0.64 0.00
62_R 75_A 0.64 0.00
66_S 117_V 0.63 0.00
46_Q 52_E 0.62 0.00
34_E 41_P 0.61 0.00
12_A 9_I 0.61 0.00
60_Q 113_P 0.61 0.00
6_H 103_T 0.60 0.00
13_R 63_T 0.60 0.00
42_F 16_D 0.60 0.00
4_G 59_Y 0.60 0.00
54_G 93_R 0.59 0.00
2_K 38_G 0.59 0.00
63_Y 76_A 0.57 0.00
38_K 99_R 0.57 0.00
2_K 82_M 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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