May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L25 - S20
UniProt: Q5SHZ1 - P80380
Length: 312
Sequences: 1197
Seq/Len: 4.42
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dZ 3v2eT 3v2fZContact Map
2j002j00T 2j01Z 2j02T 2j03ZContact Map
4juw4juwT 4juxZContact Map
4kix4kixV 4kiyT 4kizV 4kj0T 4kj1V 4kj2T 4kj3V 4kj4TContact Map
4kj54kj5V 4kj6T 4kj7V 4kj8T 4kj9V 4kjaT 4kjbV 4kjcTContact Map
3uyd3uydW 3uyeV 3uyfW 3uygVContact Map
4gd13r8sV 3r8tV 4gd1T 4gd2TContact Map
3knh3knhT 3kniZ 3knjT 3knkZContact Map
3ohc3ohcT 3ohdT 3ohjZ 3ohkZContact Map
3ohy3ohyT 3ohzZ 3oi0T 3oi1ZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_P 80_R 0.85 0.00
100_V 46_E 0.81 0.00
63_D 54_K 0.78 0.00
126_V 67_A 0.76 0.00
130_P 38_K 0.75 0.00
12_G 78_A 0.74 0.00
123_D 43_L 0.73 0.00
37_V 28_A 0.72 0.00
30_N 8_R 0.71 0.00
36_K 41_I 0.71 0.00
147_G 73_H 0.71 0.00
174_V 50_E 0.70 0.00
129_S 38_K 0.69 0.00
59_L 65_K 0.69 0.00
75_N 89_R 0.68 0.00
133_I 38_K 0.68 0.00
109_A 18_Q 0.68 0.00
110_G 65_K 0.68 0.00
26_G 72_L 0.67 0.00
92_S 61_S 0.67 0.00
142_S 58_K 0.67 0.00
13_E 43_L 0.66 0.00
20_R 20_L 0.66 0.00
153_S 27_K 0.66 0.00
53_I 38_K 0.65 0.00
17_A 30_K 0.65 0.00
27_V 23_R 0.65 0.00
122_R 55_I 0.64 0.00
20_R 47_G 0.64 0.00
44_F 13_L 0.63 0.00
96_V 70_S 0.63 0.00
91_L 85_M 0.62 0.00
9_Y 67_A 0.62 0.00
16_S 52_A 0.62 0.00
94_E 33_I 0.62 0.00
20_R 56_M 0.62 0.00
164_A 33_I 0.62 0.00
30_N 16_H 0.62 0.00
48_F 11_S 0.61 0.00
151_H 39_K 0.60 0.00
77_D 38_K 0.60 0.00
102_L 41_I 0.60 0.00
116_V 38_K 0.59 0.00
138_E 44_A 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.7537 seconds.