May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L15 - L16
UniProt: Q5SHQ7 - P60489
Length: 291
Sequences: 1251
Seq/Len: 4.45
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dPQ 3v2fPQContact Map
2j002j01PQ 2j03PQContact Map
4juw4juxPQContact Map
4kix4kixLM 4kizLM 4kj1LM 4kj3LMContact Map
4kj54kj5LM 4kj7LM 4kj9LM 4kjbLMContact Map
2zjr2zjrIJContact Map
4btc4btdPQContact Map
3uyd3uyeOP 3uygOPContact Map
4gd13r8sLM 3r8tLMContact Map
3ohc3ohjPQ 3ohkPQContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
113_K 76_K 1.04 0.04
82_G 34_L 0.85 0.02
61_R 78_P 0.83 0.02
33_R 23_G 0.80 0.02
86_K 18_K 0.78 0.02
85_L 38_E 0.78 0.02
85_L 27_V 0.76 0.01
105_L 83_M 0.75 0.01
3_L 81_V 0.73 0.01
24_G 78_P 0.72 0.01
14_K 21_T 0.71 0.01
31_A 122_G 0.71 0.01
6_L 20_A 0.68 0.01
33_R 3_M 0.68 0.01
60_M 131_I 0.67 0.01
32_T 52_V 0.67 0.01
132_K 3_M 0.67 0.01
39_K 98_K 0.65 0.01
78_P 102_V 0.64 0.01
138_L 119_R 0.64 0.01
114_I 96_V 0.64 0.01
83_V 76_K 0.63 0.01
121_K 23_G 0.63 0.01
87_D 90_V 0.63 0.01
103_A 25_D 0.62 0.01
68_Q 107_A 0.62 0.01
90_R 89_N 0.61 0.01
111_R 76_K 0.61 0.01
33_R 76_K 0.61 0.01
53_G 82_R 0.60 0.01
138_L 97_V 0.60 0.01
50_R 127_I 0.60 0.01
145_P 26_Y 0.60 0.01
2_K 32_Y 0.60 0.01
116_G 107_A 0.60 0.01
97_P 83_M 0.60 0.01
70_Q 90_V 0.59 0.01
82_G 57_H 0.59 0.01
5_D 89_N 0.58 0.01
84_N 130_K 0.58 0.01
9_N 45_Q 0.58 0.01
39_K 41_W 0.58 0.01
131_S 22_K 0.58 0.01
4_S 132_V 0.58 0.01
103_A 13_Q 0.57 0.01
124_K 59_R 0.57 0.01
32_T 106_V 0.57 0.01
129_A 75_T 0.57 0.01
15_R 102_V 0.57 0.01
137_K 81_V 0.57 0.01
17_K 22_K 0.57 0.01
56_S 106_V 0.57 0.01
58_T 42_I 0.57 0.01
102_R 110_T 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3848 seconds.