May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L30 - L35
UniProt: Q5SHQ6 - Q5SKU1
Length: 125
Sequences: 971
Seq/Len: 7.83
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2d38 3v2f38Contact Map
2j002j0138 2j0338Contact Map
4juw4jux38Contact Map
4kix4kixZ3 4kizZ3 4kj1Z3 4kj3Z3Contact Map
4kj54kj5Z3 4kj7Z3 4kj9Z3 4kjbZ3Contact Map
2zjr2zjrW3Contact Map
4btc4btd38Contact Map
3uyd3uyeX8 3uygX8Contact Map
4gd13r8sZ3 3r8tZ3Contact Map
3ohc3ohj38 3ohk38Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
4_L 51_A 0.72 0.00
53_L 62_L 0.71 0.00
35_R 44_K 0.70 0.00
50_V 62_L 0.67 0.00
13_I 58_I 0.61 0.00
18_D 51_A 0.61 0.00
19_Q 40_E 0.61 0.00
3_R 4_M 0.60 0.00
24_K 43_Q 0.60 0.00
17_K 22_V 0.60 0.00
18_D 9_G 0.59 0.00
47_V 9_G 0.59 0.00
15_Y 17_T 0.58 0.00
57_E 34_W 0.56 0.00
55_R 60_L 0.55 0.00
47_V 21_K 0.54 0.00
14_G 41_I 0.53 0.00
34_E 49_V 0.53 0.00
9_V 49_V 0.52 0.00
52_H 18_A 0.52 0.00
55_R 38_G 0.52 0.00
54_V 30_R 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6196 seconds.