May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L18 - S15
UniProt: Q5SHQ4 - Q5SJ76
Length: 201
Sequences: 1269
Seq/Len: 6.38
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dS 3v2eO 3v2fSContact Map
2j002j00O 2j01S 2j02O 2j03SContact Map
4juw4juwO 4juxSContact Map
4kix4kixO 4kiyO 4kizO 4kj0O 4kj1O 4kj2O 4kj3O 4kj4OContact Map
4kj54kj5O 4kj6O 4kj7O 4kj8O 4kj9O 4kjaO 4kjbO 4kjcOContact Map
3knh3knhO 3kniS 3knjO 3knkSContact Map
3ohc3ohcO 3ohdO 3ohjS 3ohkSContact Map
3uz63uz6R 3uz7R 3uz8Q 3uz9QContact Map
3oge3ogeO 3ogyO 3oh5S 3oh7SContact Map
3uyd3uydR 3uyeQ 3uyfR 3uygQContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_V 59_M 0.91 0.01
32_L 89_G 0.83 0.01
34_H 32_L 0.81 0.01
22_G 2_P 0.75 0.01
59_K 62_Q 0.73 0.01
7_Y 70_L 0.72 0.01
23_R 64_R 0.72 0.01
79_A 19_P 0.71 0.01
10_R 32_L 0.68 0.00
81_G 26_E 0.68 0.00
74_A 60_V 0.68 0.00
79_A 44_K 0.67 0.00
76_K 89_G 0.65 0.00
82_I 35_R 0.64 0.00
45_G 64_R 0.63 0.00
53_S 31_L 0.62 0.00
66_A 20_G 0.62 0.00
16_N 87_I 0.61 0.00
66_A 64_R 0.61 0.00
36_Y 65_R 0.61 0.00
56_L 73_E 0.60 0.00
66_A 70_L 0.59 0.00
18_I 3_I 0.59 0.00
11_K 1_M 0.59 0.00
98_V 6_E 0.58 0.00
72_A 89_G 0.58 0.00
80_L 47_K 0.57 0.00
48_L 72_R 0.56 0.00
111_E 37_N 0.56 0.00
24_L 74_D 0.56 0.00
26_L 68_R 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.2205 seconds.