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OPENSEQ.org
L18 - L22
UniProt: Q5SHQ4 - Q5SHP3
Length: 225
Sequences: 1229
Seq/Len: 5.56
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoNRContact Map
1vq81vq8NRContact Map
1vqp1vqpNRContact Map
1vqm1vqmNRContact Map
1vql1vqlNRContact Map
1vqk1vqkNRContact Map
1yhq1yhqNRContact Map
1s721s72NRContact Map
1vq91vq9NRContact Map
1vqn1vqnNRContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
93_K 85_V 0.88 0.01
10_R 89_A 0.72 0.00
32_L 89_A 0.72 0.00
10_R 85_V 0.72 0.00
32_L 90_R 0.71 0.00
111_E 31_E 0.71 0.00
99_K 83_K 0.71 0.00
101_L 61_N 0.67 0.00
8_E 67_D 0.64 0.00
112_F 59_V 0.64 0.00
92_Y 65_L 0.64 0.00
14_V 83_K 0.64 0.00
10_R 88_R 0.63 0.00
112_F 61_N 0.63 0.00
16_N 106_I 0.62 0.00
57_K 27_K 0.61 0.00
53_S 2_E 0.60 0.00
11_K 76_V 0.60 0.00
82_I 45_Y 0.60 0.00
8_E 68_R 0.59 0.00
108_G 45_Y 0.58 0.00
77_A 47_V 0.57 0.00
30_R 50_V 0.57 0.00
37_A 10_V 0.56 0.00
9_R 62_H 0.56 0.00
10_R 101_S 0.56 0.00
98_V 23_L 0.55 0.00
108_G 90_R 0.55 0.00
10_R 58_A 0.54 0.00
17_R 24_I 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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