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OPENSEQ.org
L06 - L35
UniProt: Q5SHQ3 - Q5SKU1
Length: 245
Sequences: 1306
Seq/Len: 5.37
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dH8 3v2fH8Contact Map
2j002j01H8 2j03H8Contact Map
4juw4juxH8Contact Map
4kix4kixG3 4kizG3 4kj1G3 4kj3G3Contact Map
4kj54kj5G3 4kj7G3 4kj9G3 4kjbG3Contact Map
2zjr2zjrE3Contact Map
4btc4btdH8Contact Map
3uyd3uyeH8 3uygH8Contact Map
4gd13r8sG3 3r8tG3Contact Map
3knh3kniH8 3knkH8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
24_V 64_Y 0.67 0.00
139_Q 46_R 0.66 0.00
176_A 45_G 0.64 0.00
139_Q 30_R 0.64 0.00
176_A 57_R 0.63 0.00
109_F 62_L 0.62 0.00
18_E 55_A 0.62 0.00
150_A 61_L 0.58 0.00
174_G 17_T 0.57 0.00
6_R 30_R 0.57 0.00
67_L 40_E 0.57 0.00
94_Y 9_G 0.56 0.00
112_P 11_K 0.55 0.00
50_V 48_F 0.54 0.00
112_P 7_H 0.54 0.00
16_S 4_M 0.54 0.00
152_R 3_K 0.54 0.00
87_L 60_L 0.54 0.00
92_I 48_F 0.53 0.00
41_M 25_M 0.53 0.00
109_F 58_I 0.53 0.00
77_K 9_G 0.53 0.00
92_I 29_K 0.53 0.00
128_P 30_R 0.52 0.00
178_A 15_K 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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