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OPENSEQ.org
L05 - S08
UniProt: Q5SHQ0 - Q5SHQ2
Length: 320
Sequences: 1504
Seq/Len: 4.88
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dG 3v2eH 3v2fGContact Map
2j002j00H 2j01G 2j02H 2j03GContact Map
4juw4juwH 4juxGContact Map
4kix4kixF 4kiyH 4kizF 4kj0H 4kj1F 4kj2H 4kj3F 4kj4HContact Map
4kj54kj5F 4kj6H 4kj7F 4kj8H 4kj9F 4kjaH 4kjbF 4kjcHContact Map
3knh3knhH 3kniG 3knjH 3knkGContact Map
3ohc3ohcH 3ohdH 3ohjG 3ohkGContact Map
3uz63uz6K 3uz7K 3uz8G 3uz9GContact Map
3u5b3u5cW 3u5eJ 3u5gW 3u5iJContact Map
3oge3ogeH 3ogyH 3oh5G 3oh7GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_L 135_C 0.98 0.02
135_L 105_R 0.85 0.01
149_V 83_I 0.83 0.01
53_L 44_F 0.80 0.01
132_N 79_V 0.79 0.01
8_K 76_P 0.76 0.01
82_L 128_G 0.75 0.01
56_A 2_L 0.75 0.01
30_E 86_I 0.73 0.01
105_K 138_W 0.72 0.01
177_G 138_W 0.71 0.01
107_L 6_I 0.71 0.01
52_I 49_E 0.70 0.01
58_Q 47_G 0.70 0.01
52_I 128_G 0.69 0.01
114_I 105_R 0.69 0.01
151_A 76_P 0.69 0.01
135_L 55_G 0.67 0.01
17_P 109_I 0.67 0.01
63_I 137_V 0.67 0.01
82_L 35_I 0.66 0.01
43_L 90_G 0.66 0.01
39_I 116_K 0.66 0.01
156_D 123_E 0.66 0.01
155_M 134_I 0.65 0.01
17_P 129_V 0.65 0.01
170_R 42_E 0.65 0.01
49_D 21_K 0.65 0.01
45_E 134_I 0.64 0.01
68_P 59_L 0.64 0.01
12_Y 134_I 0.64 0.01
124_S 3_T 0.64 0.01
27_N 135_C 0.63 0.01
20_I 41_R 0.63 0.01
167_E 109_I 0.62 0.01
176_L 38_I 0.61 0.01
174_E 104_R 0.61 0.01
68_P 136_E 0.61 0.01
181_R 20_Y 0.60 0.01
120_L 53_V 0.60 0.01
77_I 80_I 0.60 0.01
149_V 75_R 0.59 0.01
16_R 96_G 0.59 0.01
170_R 123_E 0.59 0.01
158_A 46_K 0.58 0.01
147_D 129_V 0.58 0.01
34_L 46_K 0.58 0.01
176_L 57_P 0.58 0.01
156_D 121_D 0.58 0.01
57_A 21_K 0.57 0.01
123_N 20_Y 0.57 0.01
180_F 106_G 0.57 0.01
121_N 97_V 0.57 0.01
136_R 61_V 0.57 0.01
30_E 78_Q 0.57 0.01
130_N 27_P 0.57 0.01
37_V 99_E 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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