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OPENSEQ.org
L05 - L13
UniProt: Q5SHQ0 - P60488
Length: 322
Sequences: 1537
Seq/Len: 4.83
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoDJContact Map
1vq81vq8DJContact Map
1vqp1vqpDJContact Map
1vqm1vqmDJContact Map
1vql1vqlDJContact Map
1vqk1vqkDJContact Map
1yhq1yhqDJContact Map
1s721s72DJContact Map
1vq91vq9DJContact Map
1vqn1vqnDJContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
96_R 105_G 0.82 0.00
103_L 3_T 0.80 0.00
13_E 7_K 0.77 0.00
54_E 2_K 0.77 0.00
35_E 136_E 0.76 0.00
76_S 82_L 0.71 0.00
152_L 6_P 0.70 0.00
13_E 134_R 0.69 0.00
27_N 139_E 0.69 0.00
142_P 72_Y 0.69 0.00
60_L 88_E 0.69 0.00
135_L 72_Y 0.66 0.00
96_R 52_V 0.66 0.00
103_L 99_L 0.65 0.00
138_Q 33_L 0.65 0.00
120_L 71_I 0.65 0.00
68_P 82_L 0.64 0.00
8_K 28_T 0.63 0.00
149_V 139_E 0.63 0.00
41_Q 73_T 0.63 0.00
109_V 6_P 0.62 0.00
100_W 8_Q 0.62 0.00
76_S 1_M 0.61 0.00
41_Q 5_V 0.61 0.00
88_I 86_P 0.60 0.00
9_R 137_K 0.60 0.00
182_K 83_K 0.60 0.00
146_Y 45_N 0.60 0.00
38_V 41_D 0.60 0.00
137_E 104_K 0.59 0.00
180_F 45_N 0.59 0.00
140_I 105_G 0.59 0.00
47_K 4_Y 0.58 0.00
178_F 48_M 0.58 0.00
118_R 42_W 0.57 0.00
31_V 2_K 0.57 0.00
50_A 4_Y 0.57 0.00
41_Q 82_L 0.57 0.00
170_R 27_A 0.57 0.00
47_K 87_L 0.57 0.00
24_G 54_V 0.57 0.00
27_N 96_E 0.56 0.00
72_R 126_P 0.56 0.00
149_V 26_L 0.56 0.00
84_K 121_K 0.56 0.00
73_A 10_E 0.56 0.00
21_R 94_H 0.56 0.00
90_L 119_R 0.55 0.00
135_L 59_K 0.55 0.00
12_Y 6_P 0.55 0.00
162_T 26_L 0.55 0.00
135_L 79_P 0.54 0.00
133_L 89_K 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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