May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L24 - L32
UniProt: Q5SHP9 - P80339
Length: 170
Sequences: 1018
Seq/Len: 6.48
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dY5 3v2fY5Contact Map
2j002j01Y5 2j03Y5Contact Map
4juw4juxY5Contact Map
4kix4kixU0 4kizU0 4kj1U0 4kj3U0Contact Map
4kj54kj5U0 4kj7U0 4kj9U0 4kjbU0Contact Map
2zjr2zjrRZContact Map
4btc4btdY5Contact Map
3uyd3uyeU5 3uygU5Contact Map
4gd13r8sU0 3r8tU0Contact Map
3knh3kniY5 3knkY5Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_H 13_K 0.76 0.00
73_R 21_S 0.75 0.00
47_K 14_A 0.74 0.00
61_I 31_V 0.71 0.00
8_K 8_K 0.71 0.00
25_G 15_R 0.70 0.00
13_V 34_P 0.65 0.00
74_P 54_G 0.64 0.00
66_P 10_K 0.63 0.00
62_E 13_K 0.63 0.00
63_K 10_K 0.62 0.00
64_E 19_R 0.61 0.00
47_K 42_P 0.61 0.00
56_P 14_A 0.61 0.00
51_V 18_A 0.60 0.00
105_A 15_R 0.60 0.00
23_R 45_V 0.60 0.00
65_A 17_D 0.58 0.00
98_V 51_Y 0.57 0.00
95_K 60_V 0.56 0.00
99_C 7_P 0.56 0.00
50_R 53_A 0.55 0.00
51_V 22_H 0.55 0.00
66_P 33_C 0.55 0.00
26_K 35_E 0.55 0.00
17_S 44_T 0.55 0.00
59_G 38_A 0.54 0.00
104_G 18_A 0.54 0.00
76_C 5_P 0.54 0.00
105_A 16_R 0.54 0.00
38_I 26_T 0.53 0.00
107_D 45_V 0.52 0.00
68_H 15_R 0.52 0.00
88_K 31_V 0.52 0.00
40_E 12_S 0.52 0.00
52_S 38_A 0.51 0.00
16_A 58_L 0.51 0.00
28_K 12_S 0.51 0.00
50_R 41_P 0.51 0.00
91_E 34_P 0.51 0.00
23_R 29_T 0.51 0.00
90_L 28_P 0.51 0.00
16_A 36_C 0.50 0.00
77_P 59_E 0.50 0.00
99_C 49_C 0.50 0.00
62_E 21_S 0.49 0.00
57_Q 5_P 0.49 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.9615 seconds.