May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L14 - S08
UniProt: Q5SHP8 - Q5SHQ2
Length: 260
Sequences: 1430
Seq/Len: 5.65
I_Prob: 0.17
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dO 3v2eH 3v2fOContact Map
2j002j00H 2j01O 2j02H 2j03OContact Map
4juw4juwH 4juxOContact Map
4kix4kixK 4kiyH 4kizK 4kj0H 4kj1K 4kj2H 4kj3K 4kj4HContact Map
4kj54kj5K 4kj6H 4kj7K 4kj8H 4kj9K 4kjaH 4kjbK 4kjcHContact Map
3ohc3ohcH 3ohdH 3ohjO 3ohkOContact Map
3knh3knhH 3kniO 3knjH 3knkOContact Map
3uz63uz6K 3uz7K 3uz8N 3uz9NContact Map
3u5b3u5cW 3u5eV 3u5gW 3u5iVContact Map
3oge3ogeH 3ogyH 3oh5O 3oh7OContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
98_V 2_L 1.15 0.17
24_V 19_V 1.07 0.14
21_C 135_C 1.00 0.11
77_I 85_R 0.88 0.07
73_D 19_V 0.86 0.07
102_V 61_V 0.85 0.06
81_D 20_Y 0.83 0.06
58_V 3_T 0.83 0.06
111_F 137_V 0.81 0.06
66_K 105_R 0.79 0.05
77_I 120_T 0.77 0.05
45_E 135_C 0.77 0.05
32_Y 56_K 0.76 0.05
45_E 3_T 0.76 0.05
51_A 49_E 0.76 0.05
114_I 13_I 0.76 0.04
88_N 78_Q 0.75 0.04
57_V 84_R 0.73 0.04
14_T 20_Y 0.72 0.04
62_V 16_A 0.72 0.04
120_E 90_G 0.72 0.04
63_V 129_V 0.72 0.04
89_N 98_K 0.71 0.04
67_K 52_D 0.71 0.04
121_V 137_V 0.71 0.04
20_M 120_T 0.71 0.04
122_L 111_I 0.71 0.04
111_F 2_L 0.70 0.04
67_K 126_K 0.69 0.04
110_G 123_E 0.69 0.04
88_N 91_R 0.69 0.03
34_T 28_A 0.68 0.03
14_T 48_Y 0.68 0.03
84_A 116_K 0.68 0.03
38_V 128_G 0.67 0.03
2_I 59_L 0.67 0.03
76_A 3_T 0.66 0.03
29_N 75_R 0.65 0.03
42_S 47_G 0.65 0.03
68_E 41_R 0.64 0.03
14_T 53_V 0.64 0.03
29_N 28_A 0.64 0.03
69_I 134_I 0.64 0.03
115_V 138_W 0.64 0.03
23_R 95_V 0.63 0.03
39_I 26_V 0.63 0.03
110_G 100_I 0.63 0.03
20_M 10_L 0.62 0.03
14_T 56_K 0.62 0.03
28_S 1_M 0.62 0.03
96_T 88_K 0.62 0.03
96_T 128_G 0.62 0.03
73_D 79_V 0.62 0.03
109_K 76_P 0.62 0.03
92_E 78_Q 0.62 0.03
62_V 28_A 0.62 0.03
120_E 87_S 0.62 0.03
38_V 75_R 0.61 0.03
66_K 79_V 0.61 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.5134 seconds.