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OPENSEQ.org

L14 - S14
UniProt: Q5SHP8 - Q5SHQ1
Length: 183
Sequences: 837
Seq/Len: 4.57
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cN 3v2dO 3v2eN 3v2fOContact Map
2j002j00N 2j01O 2j02N 2j03OContact Map
4juw4juwN 4juxOContact Map
3ohc3ohcN 3ohdN 3ohjO 3ohkOContact Map
3knh3knhN 3kniO 3knjN 3knkOContact Map
3uz63uz6Q 3uz7Q 3uz8N 3uz9NContact Map
3u5b3u5cd 3u5eV 3u5gd 3u5iVContact Map
3oge3ogeN 3ogyN 3oh5O 3oh7OContact Map
3uyd3uydQ 3uyeN 3uyfQ 3uygNContact Map
3f1e3f1eN 3f1fO 3f1gN 3f1hOContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_D 31_R 0.96 0.01
14_T 34_Y 0.87 0.01
68_E 31_R 0.86 0.01
98_V 43_C 0.85 0.01
66_K 4_K 0.79 0.01
23_R 38_G 0.79 0.01
21_C 27_C 0.77 0.01
23_R 5_A 0.76 0.01
106_L 59_A 0.75 0.01
33_A 36_F 0.75 0.01
33_A 50_K 0.74 0.01
87_I 30_A 0.73 0.01
14_T 38_G 0.72 0.01
79_F 41_R 0.71 0.01
93_P 57_R 0.71 0.01
104_R 41_R 0.70 0.01
6_T 25_V 0.70 0.01
19_I 7_I 0.70 0.01
9_E 13_T 0.70 0.01
28_S 25_V 0.70 0.01
67_K 38_G 0.70 0.01
17_R 26_R 0.69 0.01
22_I 32_S 0.69 0.01
90_Q 33_V 0.67 0.01
21_C 24_C 0.67 0.01
111_F 37_F 0.66 0.01
108_E 33_V 0.66 0.01
110_G 59_A 0.64 0.01
111_F 43_C 0.64 0.01
14_T 7_I 0.64 0.01
25_L 9_K 0.64 0.01
90_Q 59_A 0.63 0.01
79_F 56_V 0.62 0.00
78_R 49_H 0.62 0.00
79_F 58_K 0.61 0.00
20_M 49_H 0.61 0.00
42_S 20_A 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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