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OPENSEQ.org
L29 - S20
UniProt: Q5SHP6 - P80380
Length: 178
Sequences: 1214
Seq/Len: 8.09
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2d2 3v2eT 3v2f2Contact Map
2j002j00T 2j012 2j02T 2j032Contact Map
4juw4juwT 4jux2Contact Map
4kix4kixY 4kiyT 4kizY 4kj0T 4kj1Y 4kj2T 4kj3Y 4kj4TContact Map
4kj54kj5Y 4kj6T 4kj7Y 4kj8T 4kj9Y 4kjaT 4kjbY 4kjcTContact Map
3ohc3ohcT 3ohdT 3ohj2 3ohk2Contact Map
3knh3knhT 3kni2 3knjT 3knk2Contact Map
3uz63uz6W 3uz7W 3uz8W 3uz9WContact Map
3oge3ogeT 3ogyT 3oh52 3oh72Contact Map
3uyd3uydW 3uyeW 3uyfW 3uygWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
25_V 78_A 0.87 0.01
25_V 8_R 0.84 0.01
32_L 34_K 0.70 0.00
15_K 39_K 0.70 0.00
15_K 46_E 0.68 0.00
64_L 13_L 0.60 0.00
14_R 73_H 0.60 0.00
29_K 80_R 0.60 0.00
11_E 20_L 0.57 0.00
26_R 58_K 0.56 0.00
30_R 41_I 0.56 0.00
17_S 53_L 0.55 0.00
56_Q 54_K 0.55 0.00
57_I 54_K 0.55 0.00
65_N 37_S 0.54 0.00
65_N 38_K 0.54 0.00
10_L 67_A 0.54 0.00
39_A 31_S 0.54 0.00
25_V 37_S 0.54 0.00
14_R 60_E 0.53 0.00
64_L 17_R 0.53 0.00
37_F 80_R 0.53 0.00
60_L 25_R 0.53 0.00
44_L 59_A 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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