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OPENSEQ.org
L29 - S09
UniProt: Q5SHP6 - P80374
Length: 200
Sequences: 1026
Seq/Len: 5.46
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2d2 3v2eI 3v2f2Contact Map
2j002j00I 2j012 2j02I 2j032Contact Map
4juw4juwI 4jux2Contact Map
4kix4kixY 4kiyI 4kizY 4kj0I 4kj1Y 4kj2I 4kj3Y 4kj4IContact Map
4kj54kj5Y 4kj6I 4kj7Y 4kj8I 4kj9Y 4kjaI 4kjbY 4kjcIContact Map
3ohc3ohcI 3ohdI 3ohj2 3ohk2Contact Map
3knh3knhI 3kni2 3knjI 3knk2Contact Map
3uz63uz6L 3uz7L 3uz8W 3uz9WContact Map
3u5b3u5cQ 3u5eh 3u5gQ 3u5ihContact Map
3oge3ogeI 3ogyI 3oh52 3oh72Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_G 3_Q 0.88 0.00
45_S 42_R 0.77 0.00
60_L 118_K 0.75 0.00
42_G 75_D 0.73 0.00
32_L 114_Y 0.71 0.00
20_E 95_K 0.70 0.00
30_R 122_A 0.70 0.00
36_R 116_K 0.70 0.00
19_V 106_A 0.69 0.00
16_L 50_L 0.69 0.00
29_K 122_A 0.69 0.00
46_Q 117_H 0.68 0.00
34_E 70_K 0.67 0.00
14_R 90_P 0.66 0.00
15_K 13_A 0.66 0.00
39_A 3_Q 0.65 0.00
61_L 125_Y 0.64 0.00
65_N 27_T 0.64 0.00
57_I 91_D 0.64 0.00
57_I 78_K 0.63 0.00
47_N 26_V 0.62 0.00
19_V 58_H 0.61 0.00
49_K 36_Y 0.61 0.00
29_K 102_L 0.61 0.00
67_K 123_P 0.60 0.00
18_P 57_G 0.59 0.00
13_A 91_D 0.59 0.00
21_L 77_I 0.59 0.00
47_N 101_F 0.59 0.00
16_L 117_H 0.59 0.00
18_P 28_V 0.59 0.00
55_R 101_F 0.59 0.00
28_K 49_P 0.58 0.00
34_E 32_D 0.58 0.00
52_D 33_F 0.58 0.00
44_L 78_K 0.57 0.00
39_A 78_K 0.57 0.00
23_K 91_D 0.57 0.00
9_Q 60_D 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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