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OPENSEQ.org
L29 - S07
UniProt: Q5SHP6 - P17291
Length: 228
Sequences: 943
Seq/Len: 4.29
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2d2 3v2eG 3v2f2Contact Map
2j002j00G 2j012 2j02G 2j032Contact Map
4juw4juwG 4jux2Contact Map
4kix4kixY 4kiyG 4kizY 4kj0G 4kj1Y 4kj2G 4kj3Y 4kj4GContact Map
4kj54kj5Y 4kj6G 4kj7Y 4kj8G 4kj9Y 4kjaG 4kjbY 4kjcGContact Map
3knh3knhG 3kni2 3knjG 3knk2Contact Map
3ohc3ohcG 3ohdG 3ohj2 3ohk2Contact Map
3uz63uz6J 3uz7J 3uz8W 3uz9WContact Map
3oge3ogeG 3ogyG 3oh52 3oh72Contact Map
3uyd3uydJ 3uyeW 3uyfJ 3uygWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
54_K 29_K 0.82 0.00
47_N 114_R 0.81 0.00
42_G 133_G 0.81 0.00
61_L 96_Q 0.79 0.00
47_N 38_L 0.78 0.00
25_V 43_F 0.78 0.00
23_K 138_K 0.76 0.00
59_R 156_W 0.75 0.00
29_K 22_L 0.74 0.00
40_S 155_R 0.73 0.00
27_E 67_E 0.73 0.00
56_Q 64_Q 0.71 0.00
54_K 117_A 0.71 0.00
39_A 152_A 0.69 0.00
39_A 121_A 0.68 0.00
50_I 2_A 0.68 0.00
71_N 14_P 0.68 0.00
45_S 129_E 0.68 0.00
25_V 83_A 0.67 0.00
52_D 149_R 0.67 0.00
22_E 27_I 0.67 0.00
36_R 47_C 0.66 0.00
42_G 78_R 0.65 0.00
68_R 4_R 0.65 0.00
30_R 107_A 0.65 0.00
34_E 84_N 0.65 0.00
43_Q 102_R 0.65 0.00
56_Q 43_F 0.64 0.00
52_D 143_R 0.64 0.00
17_S 52_E 0.64 0.00
60_L 16_L 0.63 0.00
42_G 105_V 0.63 0.00
71_N 134_A 0.62 0.00
15_K 105_V 0.62 0.00
20_E 124_L 0.62 0.00
32_L 101_L 0.62 0.00
28_K 147_A 0.61 0.00
34_E 25_A 0.61 0.00
38_Q 102_R 0.61 0.00
34_E 58_P 0.61 0.00
64_L 72_R 0.61 0.00
29_K 129_E 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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