May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L22 - S19
UniProt: Q5SHP3 - Q5SHP2
Length: 206
Sequences: 1429
Seq/Len: 7.11
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cS 3v2dW 3v2eS 3v2fWContact Map
2j002j00S 2j01W 2j02S 2j03WContact Map
4juw4juwS 4juxWContact Map
4kix4kixS 4kiyS 4kizS 4kj0S 4kj1S 4kj2S 4kj3S 4kj4SContact Map
4kj54kj5S 4kj6S 4kj7S 4kj8S 4kj9S 4kjaS 4kjbS 4kjcSContact Map
3ohc3ohcS 3ohdS 3ohjW 3ohkWContact Map
3knh3knhS 3kniW 3knjS 3knkWContact Map
3uz63uz6V 3uz7V 3uz8S 3uz9SContact Map
3oge3ogeS 3ogyS 3oh5W 3oh7WContact Map
3uyd3uydV 3uyeS 3uyfV 3uygSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_H 26_G 0.93 0.01
62_H 45_V 0.90 0.01
61_N 39_T 0.82 0.01
47_V 51_V 0.80 0.01
30_E 44_M 0.80 0.01
97_K 17_E 0.75 0.01
60_N 84_G 0.75 0.01
60_N 57_H 0.73 0.01
10_V 71_L 0.71 0.01
76_V 51_V 0.70 0.01
9_Y 44_M 0.70 0.01
46_F 29_R 0.69 0.01
72_K 57_H 0.68 0.01
94_D 41_V 0.66 0.01
93_A 58_V 0.66 0.01
19_L 87_A 0.66 0.01
33_R 67_V 0.65 0.01
38_Y 75_A 0.65 0.01
81_A 86_E 0.65 0.01
72_K 67_V 0.64 0.01
65_L 88_K 0.63 0.01
43_G 25_K 0.62 0.01
2_E 26_G 0.62 0.00
76_V 58_V 0.61 0.00
86_L 84_G 0.61 0.00
11_R 30_L 0.61 0.00
44_A 86_E 0.60 0.00
94_D 65_N 0.59 0.00
86_L 20_L 0.58 0.00
96_I 57_H 0.57 0.00
62_H 52_Y 0.57 0.00
59_V 32_K 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.5705 seconds.