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OPENSEQ.org
L23 - S04
UniProt: Q5SHP0 - P80373
Length: 305
Sequences: 1257
Seq/Len: 4.19
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dX 3v2eD 3v2fXContact Map
2j002j00D 2j01X 2j02D 2j03XContact Map
4juw4juwD 4juxXContact Map
4kix4kixT 4kiyD 4kizT 4kj0D 4kj1T 4kj2D 4kj3T 4kj4DContact Map
4kj54kj5T 4kj6D 4kj7T 4kj8D 4kj9T 4kjaD 4kjbT 4kjcDContact Map
3knh3knhD 3kniX 3knjD 3knkXContact Map
3ohc3ohcD 3ohdD 3ohjX 3ohkXContact Map
3uz63uz6G 3uz7G 3uz8T 3uz9TContact Map
3u5b3u5cEJ 3u5eX 3u5gEJ 3u5iXContact Map
3oge3ogeD 3ogyD 3oh5X 3oh7XContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
7_V 170_V 0.82 0.00
90_E 201_Q 0.81 0.00
13_L 136_P 0.81 0.00
59_V 7_P 0.81 0.00
59_V 183_G 0.78 0.00
60_R 16_G 0.75 0.00
43_V 121_V 0.72 0.00
8_I 64_L 0.72 0.00
8_I 120_L 0.72 0.00
65_R 140_V 0.71 0.00
42_A 143_G 0.71 0.00
38_E 203_V 0.70 0.00
84_A 10_R 0.70 0.00
15_E 204_I 0.70 0.00
56_T 73_R 0.69 0.00
80_I 54_Y 0.69 0.00
81_V 89_T 0.68 0.00
91_A 206_F 0.68 0.00
84_A 181_M 0.67 0.00
57_L 79_F 0.66 0.00
91_A 193_D 0.66 0.00
72_K 81_E 0.66 0.00
76_R 110_F 0.66 0.00
40_K 190_D 0.66 0.00
14_S 198_V 0.66 0.00
27_T 202_L 0.66 0.00
31_H 146_I 0.65 0.00
83_V 55_A 0.65 0.00
37_T 146_I 0.65 0.00
48_K 55_A 0.65 0.00
8_I 184_K 0.64 0.00
26_Y 138_Y 0.63 0.00
60_R 199_N 0.63 0.00
83_V 110_F 0.63 0.00
25_K 184_K 0.63 0.00
25_K 203_V 0.62 0.00
94_G 35_R 0.62 0.00
60_R 51_P 0.62 0.00
81_V 116_Q 0.62 0.00
9_L 19_L 0.61 0.00
37_T 88_V 0.61 0.00
87_Q 142_P 0.61 0.00
34_A 189_P 0.61 0.00
70_L 99_S 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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