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OPENSEQ.org
L23 - S02
UniProt: Q5SHP0 - P80371
Length: 352
Sequences: 1477
Seq/Len: 4.62
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dX 3v2eB 3v2fXContact Map
2j002j00B 2j01X 2j02B 2j03XContact Map
4juw4juwB 4juxXContact Map
4kix4kixT 4kiyB 4kizT 4kj0B 4kj1T 4kj2B 4kj3T 4kj4BContact Map
4kj54kj5T 4kj6B 4kj7T 4kj8B 4kj9T 4kjaB 4kjbT 4kjcBContact Map
3ohc3ohcB 3ohdB 3ohjX 3ohkXContact Map
3knh3knhB 3kniX 3knjB 3knkXContact Map
3uz63uz6E 3uz7E 3uz8T 3uz9TContact Map
3u5b3u5cA 3u5eX 3u5gA 3u5iXContact Map
3oge3ogeB 3ogyB 3oh5X 3oh7XContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_G 169_K 1.02 0.03
21_F 136_V 0.90 0.02
81_V 89_G 0.89 0.02
29_W 93_V 0.85 0.02
57_L 120_A 0.85 0.02
27_T 47_T 0.83 0.02
94_G 58_I 0.83 0.02
63_K 101_M 0.81 0.01
74_P 153_R 0.77 0.01
26_Y 51_L 0.75 0.01
41_N 108_I 0.75 0.01
49_V 173_A 0.74 0.01
18_Y 67_T 0.74 0.01
70_L 117_E 0.72 0.01
14_S 67_T 0.72 0.01
92_L 198_D 0.69 0.01
93_E 88_A 0.68 0.01
78_K 163_F 0.68 0.01
92_L 20_E 0.68 0.01
43_V 15_V 0.67 0.01
17_A 130_R 0.67 0.01
72_K 168_T 0.67 0.01
53_K 184_V 0.67 0.01
60_R 223_I 0.66 0.01
94_G 92_Y 0.66 0.01
40_K 82_R 0.65 0.01
14_S 91_P 0.65 0.01
4_A 68_I 0.64 0.01
29_W 101_M 0.64 0.01
18_Y 62_A 0.64 0.01
50_K 218_A 0.63 0.01
73_R 140_H 0.63 0.01
9_L 140_H 0.63 0.01
61_G 39_I 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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