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OPENSEQ.org
L04 - L36
UniProt: Q5SHN9 - Q5SHR2
Length: 247
Sequences: 906
Seq/Len: 3.84
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dF9 3v2fF9Contact Map
2j002j01F9 2j03F9Contact Map
4juw4juxF9Contact Map
4kix4kixE4 4kizE4 4kj1E4 4kj3E4Contact Map
4kj54kj5E4 4kj7E4 4kj9E4 4kjbE4Contact Map
2zjr2zjrC4Contact Map
4btc4btdF9Contact Map
4gd13r8sE4 3r8tE4Contact Map
3knh3kniF9 3knkF9Contact Map
3v223v23F9 3v25F9Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
148_L 18_R 0.99 0.01
62_R 20_H 0.90 0.01
29_N 15_K 0.89 0.01
19_E 28_E 0.85 0.01
78_I 18_R 0.83 0.01
90_F 4_R 0.81 0.01
49_A 3_V 0.76 0.01
127_E 30_P 0.71 0.01
165_R 15_K 0.70 0.01
181_L 17_I 0.70 0.01
117_R 5_A 0.69 0.01
55_G 28_E 0.69 0.01
13_S 35_R 0.67 0.01
192_L 10_I 0.67 0.01
166_A 10_I 0.65 0.01
125_L 29_N 0.65 0.01
154_V 22_R 0.64 0.01
189_T 24_Y 0.64 0.01
98_S 25_V 0.63 0.01
7_Y 35_R 0.63 0.01
69_H 13_K 0.61 0.00
32_L 22_R 0.61 0.00
110_L 17_I 0.60 0.00
72_R 32_H 0.60 0.00
117_R 29_N 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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