May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L04 - L05
UniProt: Q5SHN9 - Q5SHQ0
Length: 392
Sequences: 1605
Seq/Len: 4.25
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoCDContact Map
1vq81vq8CDContact Map
1vqp1vqpCDContact Map
1vqm1vqmCDContact Map
1vql1vqlCDContact Map
1vqk1vqkCDContact Map
1yhq1yhqCDContact Map
1s721s72CDContact Map
1vq91vq9CDContact Map
1vqn1vqnCDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_R 72_R 0.83 0.00
29_N 96_R 0.78 0.00
183_V 60_L 0.72 0.00
121_G 169_A 0.69 0.00
103_K 136_R 0.68 0.00
56_E 26_Q 0.68 0.00
13_S 149_V 0.67 0.00
7_Y 49_D 0.67 0.00
111_A 22_R 0.66 0.00
101_L 106_L 0.65 0.00
14_P 27_N 0.64 0.00
28_I 115_R 0.64 0.00
46_R 149_V 0.64 0.00
54_R 87_P 0.63 0.00
33_L 20_I 0.63 0.00
55_G 5_V 0.62 0.00
115_A 56_A 0.62 0.00
141_A 97_D 0.62 0.00
31_H 72_R 0.61 0.00
128_A 57_A 0.61 0.00
45_R 83_R 0.61 0.00
156_L 59_E 0.60 0.00
9_I 157_I 0.60 0.00
202_F 20_I 0.60 0.00
166_A 181_R 0.60 0.00
166_A 160_V 0.59 0.00
21_A 9_R 0.59 0.00
181_L 149_V 0.59 0.00
93_K 169_A 0.59 0.00
184_Y 34_L 0.59 0.00
147_G 149_V 0.59 0.00
41_L 84_K 0.58 0.00
70_T 176_L 0.58 0.00
162_L 69_A 0.57 0.00
123_L 77_I 0.57 0.00
127_E 169_A 0.57 0.00
61_G 170_R 0.57 0.00
36_V 150_D 0.56 0.00
186_I 108_N 0.56 0.00
114_V 75_K 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.5187 seconds.