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OPENSEQ.org
L04 - S02
UniProt: Q5SHN9 - P80371
Length: 466
Sequences: 1582
Seq/Len: 3.70
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dF 3v2eB 3v2fFContact Map
2j002j00B 2j01F 2j02B 2j03FContact Map
4juw4juwB 4juxFContact Map
4kix4kixE 4kiyB 4kizE 4kj0B 4kj1E 4kj2B 4kj3E 4kj4BContact Map
4kj54kj5E 4kj6B 4kj7E 4kj8B 4kj9E 4kjaB 4kjbE 4kjcBContact Map
3knh3knhB 3kniF 3knjB 3knkFContact Map
3ohc3ohcB 3ohdB 3ohjF 3ohkFContact Map
3uz63uz6E 3uz7E 3uz8F 3uz9FContact Map
3u5b3u5cA 3u5eC 3u5gA 3u5iCContact Map
3oge3ogeB 3ogyB 3oh5F 3oh7FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_L 101_M 0.94 0.01
102_P 215_L 0.91 0.01
23_D 82_R 0.84 0.00
149_D 62_A 0.80 0.00
202_F 187_L 0.79 0.00
50_S 118_L 0.79 0.00
184_Y 140_H 0.77 0.00
53_T 115_L 0.77 0.00
51_T 101_M 0.76 0.00
73_A 164_V 0.74 0.00
191_R 186_A 0.73 0.00
85_G 154_L 0.73 0.00
201_V 222_I 0.73 0.00
188_R 181_F 0.71 0.00
58_A 143_E 0.70 0.00
30_P 172_I 0.69 0.00
192_L 81_V 0.68 0.00
32_L 203_G 0.68 0.00
189_T 119_E 0.68 0.00
186_I 106_K 0.67 0.00
66_P 54_T 0.67 0.00
181_L 179_K 0.66 0.00
106_R 91_P 0.66 0.00
46_R 78_Q 0.66 0.00
81_P 179_K 0.65 0.00
161_E 226_R 0.65 0.00
123_L 50_E 0.64 0.00
164_R 116_E 0.64 0.00
170_L 141_E 0.64 0.00
62_R 139_K 0.64 0.00
28_I 186_A 0.64 0.00
100_T 140_H 0.64 0.00
105_V 142_L 0.63 0.00
62_R 61_L 0.62 0.00
178_P 187_L 0.62 0.00
8_Q 175_R 0.62 0.00
66_P 95_Q 0.62 0.00
46_R 124_S 0.62 0.00
102_P 230_V 0.62 0.00
65_W 112_V 0.62 0.00
33_L 127_I 0.61 0.00
88_V 208_I 0.61 0.00
158_T 165_V 0.61 0.00
109_G 193_D 0.61 0.00
55_G 117_E 0.61 0.00
90_F 101_M 0.61 0.00
186_I 80_I 0.61 0.00
192_L 83_M 0.61 0.00
37_V 21_R 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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