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OPENSEQ.org
L04 - L34
UniProt: Q5SHN9 - P80340
Length: 259
Sequences: 1025
Seq/Len: 4.18
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dF7 3v2fF7Contact Map
2j002j01F7 2j03F7Contact Map
4juw4juxF7Contact Map
4kix4kixE2 4kizE2 4kj1E2 4kj3E2Contact Map
4kj54kj5E2 4kj7E2 4kj9E2 4kjbE2Contact Map
2zjr2zjrC2Contact Map
4btc4btdF7Contact Map
3uyd3uyeF7 3uygF7Contact Map
4gd13r8sE2 3r8tE2Contact Map
3ohc3ohjF7 3ohkF7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
149_D 14_K 0.85 0.00
112_M 30_V 0.77 0.00
46_R 10_R 0.76 0.00
69_H 19_R 0.75 0.00
85_G 2_K 0.74 0.00
58_A 37_K 0.73 0.00
92_P 10_R 0.72 0.00
165_R 26_G 0.71 0.00
95_R 31_L 0.70 0.00
102_P 36_Q 0.69 0.00
29_N 16_H 0.67 0.00
84_V 31_L 0.67 0.00
197_D 9_R 0.67 0.00
9_I 36_Q 0.67 0.00
129_F 1_M 0.66 0.00
90_F 22_M 0.66 0.00
140_L 40_W 0.65 0.00
44_R 9_R 0.65 0.00
69_H 22_M 0.64 0.00
206_I 25_P 0.63 0.00
58_A 33_R 0.63 0.00
24_L 5_W 0.63 0.00
156_L 33_R 0.62 0.00
10_P 31_L 0.61 0.00
59_Y 37_K 0.61 0.00
120_E 25_P 0.61 0.00
89_V 10_R 0.61 0.00
108_K 13_A 0.61 0.00
36_V 15_T 0.60 0.00
111_A 44_P 0.60 0.00
16_G 10_R 0.60 0.00
162_L 30_V 0.59 0.00
10_P 40_W 0.59 0.00
168_R 19_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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