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OPENSEQ.org
L03 - L10
UniProt: Q5SHN8 - Q8VVE3
Length: 379
Sequences: 1292
Seq/Len: 3.48
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBGContact Map
1vq81vq8BGContact Map
1vqp1vqpBGContact Map
1vqm1vqmBGContact Map
1vql1vqlBGContact Map
1vqk1vqkBGContact Map
1yhq1yhqBGContact Map
1s721s72BGContact Map
1vq91vq9BGContact Map
1vqn1vqnBGContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
38_T 36_E 1.06 0.03
120_W 55_K 0.99 0.02
172_V 119_A 0.83 0.01
62_P 94_V 0.82 0.01
188_V 128_L 0.79 0.01
149_R 91_K 0.79 0.01
198_V 64_K 0.79 0.01
148_G 164_L 0.78 0.01
62_P 14_K 0.78 0.01
37_R 60_R 0.77 0.01
149_R 114_G 0.74 0.01
9_V 109_S 0.74 0.01
102_V 4_K 0.73 0.01
7_V 78_S 0.73 0.01
97_K 48_G 0.73 0.01
36_R 80_V 0.71 0.01
33_V 26_L 0.70 0.01
15_F 38_H 0.70 0.01
79_R 87_V 0.69 0.01
18_D 6_N 0.69 0.01
77_I 93_L 0.69 0.01
132_H 14_K 0.68 0.01
94_E 4_K 0.67 0.01
108_S 10_L 0.67 0.01
167_V 116_I 0.67 0.01
108_S 58_L 0.66 0.01
34_V 147_A 0.66 0.01
4_I 167_Y 0.66 0.01
124_G 1_M 0.66 0.01
153_G 139_V 0.66 0.01
159_H 91_K 0.65 0.01
104_V 73_G 0.65 0.01
163_E 128_L 0.64 0.01
47_V 26_L 0.64 0.01
53_P 43_A 0.64 0.01
71_G 57_T 0.64 0.01
90_T 98_K 0.64 0.01
105_T 158_R 0.64 0.01
33_V 69_P 0.63 0.01
128_S 64_K 0.63 0.01
146_T 87_V 0.63 0.01
28_A 47_N 0.63 0.01
60_N 15_E 0.63 0.01
182_L 83_Y 0.62 0.01
60_N 36_E 0.62 0.01
31_C 147_A 0.61 0.01
150_V 56_N 0.61 0.01
150_V 148_E 0.61 0.01
18_D 144_A 0.61 0.01
83_D 17_L 0.61 0.01
10_G 56_N 0.61 0.01
26_I 142_L 0.61 0.01
26_I 75_Q 0.61 0.01
175_V 44_L 0.60 0.01
89_D 80_V 0.60 0.01
145_K 131_M 0.60 0.01
148_G 151_G 0.60 0.01
174_D 61_L 0.60 0.01
176_I 30_Q 0.60 0.01
18_D 83_Y 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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