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OPENSEQ.org
L03 - L30
UniProt: Q5SHN8 - Q5SHQ6
Length: 266
Sequences: 953
Seq/Len: 3.62
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBWContact Map
1vq81vq8BWContact Map
1vqp1vqpBWContact Map
1vqm1vqmBWContact Map
1vql1vqlBWContact Map
1vqk1vqkBWContact Map
1yhq1yhqBWContact Map
1s721s72BWContact Map
1vq91vq9BWContact Map
1vqn1vqnBWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
37_R 8_L 0.84 0.00
148_G 29_R 0.79 0.00
120_W 32_Q 0.79 0.00
126_P 8_L 0.75 0.00
140_S 53_L 0.75 0.00
149_R 17_K 0.74 0.00
100_E 40_T 0.73 0.00
35_Q 10_K 0.73 0.00
136_R 58_V 0.72 0.00
74_P 48_E 0.71 0.00
99_G 17_K 0.71 0.00
41_K 54_V 0.71 0.00
104_V 48_E 0.69 0.00
182_L 40_T 0.69 0.00
131_A 8_L 0.67 0.00
149_R 49_K 0.67 0.00
188_V 1_M 0.67 0.00
194_G 4_L 0.66 0.00
62_P 1_M 0.65 0.00
77_I 7_K 0.65 0.00
91_V 1_M 0.65 0.00
40_E 1_M 0.63 0.00
152_K 15_Y 0.63 0.00
137_H 20_K 0.62 0.00
144_R 5_K 0.62 0.00
116_V 11_S 0.62 0.00
52_L 47_V 0.62 0.00
79_R 8_L 0.62 0.00
50_G 16_P 0.61 0.00
4_I 14_G 0.61 0.00
116_V 46_N 0.61 0.00
196_V 7_K 0.61 0.00
84_F 9_V 0.61 0.00
91_V 12_P 0.61 0.00
173_V 8_L 0.61 0.00
165_V 54_V 0.61 0.00
145_K 42_A 0.60 0.00
61_R 55_R 0.60 0.00
162_A 48_E 0.60 0.00
50_G 52_H 0.60 0.00
179_E 32_Q 0.60 0.00
74_P 47_V 0.60 0.00
192_N 30_R 0.59 0.00
74_P 52_H 0.59 0.00
199_R 53_L 0.57 0.00
164_R 29_R 0.57 0.00
135_H 14_G 0.57 0.00
120_W 31_L 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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