May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - L05
UniProt: Q5SHN8 - Q5SHQ0
Length: 388
Sequences: 1508
Seq/Len: 3.96
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBDContact Map
1vq81vq8BDContact Map
1vqp1vqpBDContact Map
1vqm1vqmBDContact Map
1vql1vqlBDContact Map
1vqk1vqkBDContact Map
1yhq1yhqBDContact Map
1s721s72BDContact Map
1vq91vq9BDContact Map
1vqn1vqnBDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
202_K 59_E 0.96 0.01
146_T 169_A 0.95 0.01
48_Q 115_R 0.93 0.01
3_G 87_P 0.79 0.01
16_R 15_V 0.76 0.01
193_G 124_S 0.74 0.01
105_T 123_N 0.73 0.01
47_V 35_E 0.72 0.01
14_I 106_L 0.71 0.01
114_A 34_L 0.71 0.01
178_E 97_D 0.71 0.01
100_E 82_L 0.70 0.01
187_A 74_K 0.69 0.01
183_L 167_E 0.69 0.00
104_V 135_L 0.69 0.00
172_V 67_K 0.68 0.00
121_N 18_E 0.67 0.00
113_F 123_N 0.66 0.00
66_H 115_R 0.66 0.00
147_P 80_F 0.65 0.00
144_R 62_L 0.65 0.00
105_T 41_Q 0.65 0.00
37_R 120_L 0.64 0.00
156_M 90_L 0.64 0.00
197_I 74_K 0.63 0.00
167_V 20_I 0.62 0.00
52_L 135_L 0.62 0.00
72_V 37_V 0.61 0.00
149_R 28_V 0.61 0.00
136_R 156_D 0.60 0.00
78_L 30_E 0.60 0.00
25_V 77_I 0.60 0.00
121_N 118_R 0.60 0.00
128_S 10_K 0.60 0.00
141_I 155_M 0.60 0.00
98_P 167_E 0.59 0.00
121_N 8_K 0.59 0.00
52_L 55_K 0.59 0.00
117_M 152_L 0.59 0.00
120_W 104_E 0.58 0.00
71_G 39_I 0.58 0.00
99_G 165_T 0.58 0.00
180_N 72_R 0.57 0.00
31_C 86_M 0.57 0.00
68_A 39_I 0.57 0.00
71_G 24_G 0.57 0.00
68_A 133_L 0.57 0.00
116_V 101_I 0.57 0.00
20_A 135_L 0.57 0.00
25_V 162_T 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2678 seconds.