May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - L29
UniProt: Q5SHN8 - Q5SHP6
Length: 278
Sequences: 1094
Seq/Len: 4.11
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBVContact Map
1vq81vq8BVContact Map
1vqp1vqpBVContact Map
1vqm1vqmBVContact Map
1vql1vqlBVContact Map
1vqk1vqkBVContact Map
1yhq1yhqBVContact Map
1s721s72BVContact Map
1vq91vq9BVContact Map
1vqn1vqnBVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
149_R 47_N 0.86 0.00
168_M 54_K 0.85 0.00
108_S 46_Q 0.78 0.00
152_K 34_E 0.77 0.00
60_N 53_L 0.77 0.00
156_M 24_L 0.76 0.00
194_G 54_K 0.73 0.00
136_R 31_E 0.73 0.00
184_V 71_N 0.71 0.00
183_L 10_L 0.71 0.00
36_R 28_K 0.71 0.00
146_T 48_H 0.71 0.00
23_V 43_Q 0.70 0.00
78_L 57_I 0.70 0.00
171_E 55_R 0.69 0.00
32_P 45_S 0.69 0.00
107_T 45_S 0.69 0.00
198_V 66_E 0.68 0.00
203_K 61_L 0.68 0.00
89_D 15_K 0.67 0.00
68_A 17_S 0.67 0.00
192_N 42_G 0.66 0.00
30_P 17_S 0.66 0.00
192_N 59_R 0.65 0.00
75_V 29_K 0.64 0.00
157_A 68_R 0.64 0.00
100_E 55_R 0.63 0.00
142_G 60_L 0.63 0.00
164_R 22_E 0.63 0.00
163_E 20_E 0.61 0.00
195_L 44_L 0.61 0.00
85_N 19_V 0.61 0.00
108_S 15_K 0.60 0.00
16_R 57_I 0.60 0.00
199_R 65_N 0.59 0.00
58_R 32_L 0.59 0.00
184_V 52_D 0.59 0.00
111_R 40_S 0.59 0.00
45_T 45_S 0.59 0.00
184_V 15_K 0.58 0.00
197_I 67_K 0.57 0.00
49_L 54_K 0.57 0.00
16_R 21_L 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.917 seconds.