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OPENSEQ.org
L03 - L23
UniProt: Q5SHN8 - Q5SHP0
Length: 302
Sequences: 1492
Seq/Len: 5.06
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBSContact Map
1vq81vq8BSContact Map
1vqp1vqpBSContact Map
1vqm1vqmBSContact Map
1vql1vqlBSContact Map
1vqk1vqkBSContact Map
1yhq1yhqBSContact Map
1s721s72BSContact Map
1vq91vq9BSContact Map
1vqn1vqnBSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_P 26_Y 0.97 0.02
196_V 85_P 0.95 0.02
33_V 13_L 0.95 0.02
120_W 66_L 0.77 0.01
85_N 83_V 0.76 0.01
42_D 8_I 0.74 0.01
181_L 32_P 0.72 0.01
15_F 13_L 0.71 0.01
99_G 25_K 0.70 0.01
101_R 72_K 0.65 0.01
98_P 10_A 0.65 0.01
123_A 84_A 0.65 0.01
192_N 72_K 0.64 0.01
67_F 56_T 0.64 0.01
84_F 23_E 0.63 0.01
172_V 6_D 0.63 0.01
26_I 93_E 0.62 0.01
184_V 87_Q 0.62 0.01
34_V 66_L 0.61 0.01
119_R 49_V 0.60 0.01
195_L 91_A 0.60 0.01
13_R 92_L 0.60 0.01
150_V 38_E 0.60 0.01
166_T 8_I 0.59 0.01
43_G 28_F 0.59 0.01
102_V 58_H 0.59 0.01
7_V 78_K 0.59 0.01
23_V 47_F 0.58 0.01
3_G 40_K 0.58 0.01
31_C 43_V 0.58 0.01
182_L 3_T 0.58 0.01
146_T 9_L 0.58 0.01
93_V 8_I 0.58 0.01
63_L 17_A 0.58 0.01
100_E 46_A 0.57 0.01
20_A 91_A 0.57 0.01
193_G 55_N 0.57 0.01
147_P 16_K 0.57 0.01
157_A 93_E 0.56 0.01
25_V 85_P 0.56 0.01
104_V 71_G 0.56 0.01
117_M 59_V 0.56 0.01
104_V 7_V 0.56 0.01
160_Y 38_E 0.56 0.01
113_F 46_A 0.56 0.01
105_T 82_Q 0.56 0.01
172_V 35_T 0.56 0.01
9_V 7_V 0.56 0.01
33_V 38_E 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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