May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
S03 - S09
UniProt: P80372 - P80374
Length: 367
Sequences: 1226
Seq/Len: 3.65
I_Prob: 0.29
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeCIContact Map
3v2c3v2cCI 3v2eCIContact Map
2uub2uubCIContact Map
2j002j00CI 2j02CIContact Map
3t1y3t1yCIContact Map
4juw4juwCIContact Map
2uua2uuaCIContact Map
4b3m4b3mCIContact Map
2uxc2uxcCIContact Map
4kix4kiyCI 4kj0CI 4kj2CI 4kj4CIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
165_T 33_F 1.26 0.29
143_E 3_Q 1.06 0.16
18_W 121_R 1.00 0.14
202_I 32_D 1.00 0.14
103_V 48_E 0.97 0.12
126_R 80_G 0.97 0.12
10_F 121_R 0.96 0.12
14_I 118_K 0.95 0.11
10_F 114_Y 0.91 0.10
102_N 118_K 0.89 0.09
15_T 117_H 0.86 0.08
100_A 63_I 0.85 0.08
101_L 87_Q 0.83 0.07
141_V 59_F 0.82 0.07
14_I 30_G 0.82 0.07
79_R 40_L 0.82 0.07
33_L 17_V 0.81 0.07
158_G 118_K 0.81 0.07
35_E 14_V 0.81 0.07
150_K 6_G 0.81 0.07
85_R 79_L 0.80 0.07
166_E 126_S 0.80 0.07
45_K 33_F 0.80 0.06
5_I 52_A 0.80 0.06
76_V 78_K 0.79 0.06
109_P 14_V 0.79 0.06
83_R 118_K 0.78 0.06
49_S 28_V 0.78 0.06
145_G 86_V 0.77 0.06
143_E 37_F 0.77 0.06
53_A 34_N 0.76 0.06
93_K 32_D 0.76 0.06
116_V 112_K 0.76 0.06
66_V 45_A 0.76 0.06
152_I 121_R 0.75 0.05
170_Q 31_Q 0.74 0.05
33_L 6_G 0.74 0.05
161_E 54_D 0.73 0.05
56_D 118_K 0.73 0.05
64_V 44_V 0.73 0.05
75_V 32_D 0.73 0.05
19_E 31_Q 0.73 0.05
124_I 126_S 0.73 0.05
6_H 38_Q 0.72 0.05
143_E 43_A 0.72 0.05
190_R 30_G 0.72 0.05
25_G 81_I 0.72 0.05
141_V 88_Y 0.71 0.04
20_S 101_F 0.71 0.04
29_Y 40_L 0.70 0.04
209_G 109_V 0.70 0.04
182_I 123_P 0.70 0.04
86_V 27_T 0.70 0.04
15_T 42_R 0.70 0.04
165_T 87_Q 0.70 0.04
23_Y 78_K 0.70 0.04
88_R 123_P 0.69 0.04
24_A 75_D 0.69 0.04
8_I 28_V 0.69 0.04
202_I 91_D 0.69 0.04
158_G 64_T 0.69 0.04
104_Q 108_V 0.69 0.04
93_K 34_N 0.69 0.04
54_R 62_Y 0.68 0.04
83_R 109_V 0.68 0.04
12_L 27_T 0.68 0.04
16_R 65_V 0.68 0.04
23_Y 56_L 0.68 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2154 seconds.