May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L34 - L35
UniProt: P80340 - Q5SKU1
Length: 114
Sequences: 891
Seq/Len: 8.17
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2d78 3v2f78Contact Map
2j002j0178 2j0378Contact Map
4juw4jux78Contact Map
4kix4kix23 4kiz23 4kj123 4kj323Contact Map
4kj54kj523 4kj723 4kj923 4kjb23Contact Map
2zjr2zjr23Contact Map
4btc4btd78Contact Map
3uyd3uye78 3uyg78Contact Map
3v223v2378 3v2578Contact Map
4gd13r8s23 3r8t23Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_K 25_M 0.91 0.01
9_R 21_K 0.87 0.01
30_V 28_G 0.87 0.01
25_P 16_I 0.85 0.01
36_Q 32_L 0.84 0.01
3_R 22_V 0.82 0.01
29_K 15_K 0.81 0.01
3_R 58_I 0.78 0.01
1_M 23_V 0.76 0.01
31_L 47_K 0.74 0.01
30_V 24_A 0.72 0.01
40_W 18_A 0.71 0.01
12_R 14_V 0.70 0.01
33_R 18_A 0.70 0.01
14_K 46_R 0.70 0.01
22_M 37_S 0.69 0.01
24_T 42_R 0.68 0.01
32_K 7_H 0.66 0.00
5_W 8_K 0.65 0.00
44_P 62_L 0.65 0.00
11_K 30_R 0.64 0.00
30_V 51_A 0.64 0.00
24_T 9_G 0.64 0.00
8_N 7_H 0.62 0.00
16_H 27_T 0.61 0.00
26_G 50_L 0.61 0.00
14_K 45_G 0.60 0.00
8_N 34_W 0.60 0.00
29_K 8_K 0.59 0.00
23_R 14_V 0.58 0.00
37_K 32_L 0.58 0.00
32_K 17_T 0.57 0.00
45_A 9_G 0.56 0.00
38_G 2_P 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.276 seconds.