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OPENSEQ.org
L34 - S04
UniProt: P80340 - P80373
Length: 258
Sequences: 910
Seq/Len: 3.60
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d7 3v2eD 3v2f7Contact Map
2j002j00D 2j017 2j02D 2j037Contact Map
4juw4juwD 4jux7Contact Map
4kix4kix2 4kiyD 4kiz2 4kj0D 4kj12 4kj2D 4kj32 4kj4DContact Map
4kj54kj52 4kj6D 4kj72 4kj8D 4kj92 4kjaD 4kjb2 4kjcDContact Map
3uyd3uydG 3uye7 3uyfG 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1D 4gd2DContact Map
3knh3knhD 3kni7 3knjD 3knk7Contact Map
3ohc3ohcD 3ohdD 3ohj7 3ohk7Contact Map
3f1e3f1eD 3f1f7 3f1gD 3f1h7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
30_V 184_K 1.07 0.03
40_W 112_V 0.96 0.03
9_R 127_T 0.86 0.02
43_T 77_N 0.84 0.02
30_V 3_R 0.82 0.02
37_K 99_S 0.81 0.01
20_A 192_E 0.81 0.01
5_W 206_F 0.80 0.01
14_K 17_V 0.73 0.01
24_T 116_Q 0.72 0.01
32_K 80_E 0.71 0.01
3_R 136_P 0.71 0.01
5_W 124_G 0.68 0.01
44_P 110_F 0.68 0.01
24_T 10_R 0.66 0.01
3_R 41_G 0.66 0.01
10_R 64_L 0.66 0.01
6_Q 79_F 0.65 0.01
30_V 108_L 0.65 0.01
16_H 57_R 0.65 0.01
31_L 56_V 0.65 0.01
26_G 120_L 0.64 0.01
4_T 121_V 0.63 0.01
32_K 55_A 0.63 0.01
19_R 54_Y 0.63 0.01
14_K 21_L 0.62 0.01
33_R 147_A 0.61 0.01
10_R 125_H 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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