May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L32 - S16
UniProt: P80339 - Q5SJH3
Length: 148
Sequences: 941
Seq/Len: 6.63
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d5 3v2eP 3v2f5Contact Map
2j002j00P 2j015 2j02P 2j035Contact Map
4juw4juwP 4jux5Contact Map
4kix4kix0 4kiyP 4kiz0 4kj0P 4kj10 4kj2P 4kj30 4kj4PContact Map
4kj54kj50 4kj6P 4kj70 4kj8P 4kj90 4kjaP 4kjb0 4kjcPContact Map
3uyd3uydS 3uye5 3uyfS 3uyg5Contact Map
4gd13r8s0 3r8t0 4gd1P 4gd2PContact Map
3ohc3ohcP 3ohdP 3ohj5 3ohk5Contact Map
3knh3knhP 3kni5 3knjP 3knk5Contact Map
3ohy3ohyP 3ohz5 3oi0P 3oi15Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
17_D 40_D 0.74 0.00
13_K 69_T 0.72 0.00
22_H 75_R 0.68 0.00
26_T 36_I 0.67 0.00
14_A 33_I 0.65 0.00
55_R 28_R 0.64 0.00
45_V 45_T 0.63 0.00
28_P 69_T 0.62 0.00
53_A 22_T 0.61 0.00
53_A 61_S 0.60 0.00
37_K 43_K 0.60 0.00
34_P 39_Y 0.60 0.00
20_R 30_G 0.60 0.00
4_H 1_M 0.59 0.00
31_V 74_L 0.59 0.00
10_K 72_R 0.58 0.00
36_C 3_K 0.58 0.00
35_E 60_L 0.57 0.00
44_T 69_T 0.57 0.00
51_Y 44_T 0.57 0.00
6_V 67_T 0.57 0.00
32_P 72_R 0.57 0.00
59_E 24_A 0.57 0.00
50_G 18_R 0.56 0.00
10_K 18_R 0.56 0.00
8_K 56_A 0.56 0.00
37_K 41_P 0.55 0.00
13_K 7_A 0.55 0.00
45_V 67_T 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6413 seconds.