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OPENSEQ.org

HDA - YIDD
UniProt: P69931 - P0A8C8
Length: 318
Sequences: 268
Seq/Len: 0.91
I_Prob: 0.00

HDA - DnaA regulatory inactivator Hda
Paralog alert: 0.41 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HDA
YIDD - Putative membrane protein insertion efficiency factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YIDD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
178_A 53_G 1.27 0.00
222_L 20_Q 1.13 0.00
143_L 42_I 1.13 0.00
116_A 74_P 1.12 0.00
64_C 32_R 1.11 0.00
144_N 33_F 1.09 0.00
138_R 74_P 1.05 0.00
114_E 74_P 1.05 0.00
21_S 56_L 1.05 0.00
20_A 45_L 1.05 0.00
49_W 65_H 1.02 0.00
51_R 61_V 0.99 0.00
183_F 52_K 0.99 0.00
62_A 23_I 0.98 0.00
133_L 21_R 0.96 0.00
107_I 39_S 0.95 0.00
220_R 45_L 0.95 0.00
78_P 11_V 0.95 0.00
179_R 46_R 0.94 0.00
16_D 57_T 0.94 0.00
146_G 8_G 0.93 0.00
145_L 36_T 0.93 0.00
21_S 28_G 0.92 0.00
183_F 63_K 0.91 0.00
197_L 36_T 0.91 0.00
225_P 61_V 0.89 0.00
98_L 54_S 0.89 0.00
150_L 33_F 0.87 0.00
150_L 32_R 0.87 0.00
75_G 16_I 0.87 0.00
167_D 76_P 0.85 0.00
73_A 17_R 0.85 0.00
196_R 47_R 0.85 0.00
219_Q 55_W 0.84 0.00
73_A 58_V 0.84 0.00
48_L 21_R 0.83 0.00
133_L 10_R 0.83 0.00
20_A 34_T 0.82 0.00
132_L 68_H 0.82 0.00
47_Y 19_Y 0.82 0.00
138_R 23_I 0.82 0.00
222_L 36_T 0.81 0.00
163_Q 76_P 0.81 0.00
158_Q 44_A 0.81 0.00
89_V 32_R 0.80 0.00
178_A 32_R 0.80 0.00
126_E 42_I 0.79 0.00
138_R 72_D 0.78 0.00
135_T 33_F 0.78 0.00
21_S 46_R 0.78 0.00
62_A 61_V 0.77 0.00
195_K 23_I 0.77 0.00
132_L 20_Q 0.77 0.00
72_D 41_G 0.76 0.00
79_L 52_K 0.76 0.00
107_I 34_T 0.76 0.00
34_L 11_V 0.76 0.00
197_L 63_K 0.74 0.00
178_A 49_G 0.74 0.00
186_P 54_S 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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