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OPENSEQ.org

RL5 - RPOA
UniProt: P62399 - P0A7Z4
Length: 508
Sequences: 730
Seq/Len: 1.45
I_Prob: 0.00

RL5 - 50S ribosomal protein L5
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL5
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
85_I 188_E 1.21 0.00
120_K 173_V 1.12 0.00
46_D 184_A 1.10 0.00
152_L 288_E 1.07 0.00
24_S 80_E 1.06 0.00
97_W 189_A 1.06 0.00
71_R 90_V 1.04 0.00
61_S 140_I 1.03 0.00
178_R 289_L 1.02 0.00
103_L 80_E 1.02 0.00
1_M 88_L 1.00 0.00
111_I 290_L 1.00 0.00
31_V 305_D 0.99 0.00
73_S 144_I 0.99 0.00
24_S 164_D 0.98 0.00
173_F 203_I 0.97 0.00
133_R 180_V 0.96 0.00
143_Y 303_I 0.96 0.00
175_F 273_E 0.96 0.00
71_R 59_V 0.95 0.00
72_K 144_I 0.94 0.00
129_S 205_M 0.94 0.00
74_V 180_V 0.94 0.00
76_G 75_Q 0.94 0.00
157_T 306_V 0.92 0.00
159_T 188_E 0.92 0.00
46_D 206_E 0.92 0.00
11_E 59_V 0.91 0.00
143_Y 120_D 0.91 0.00
147_D 87_G 0.90 0.00
18_T 140_I 0.90 0.00
34_I 157_T 0.88 0.00
94_E 42_A 0.87 0.00
79_I 177_Y 0.87 0.00
121_S 110_V 0.87 0.00
104_I 129_V 0.86 0.00
28_V 308_A 0.85 0.00
85_I 177_Y 0.85 0.00
102_R 220_A 0.84 0.00
144_D 106_G 0.84 0.00
129_S 314_L 0.84 0.00
117_L 247_P 0.84 0.00
2_A 198_L 0.84 0.00
146_V 85_L 0.84 0.00
14_K 171_L 0.84 0.00
143_Y 314_L 0.84 0.00
142_D 172_L 0.84 0.00
111_I 92_V 0.84 0.00
57_L 130_I 0.83 0.00
147_D 199_D 0.83 0.00
157_T 26_V 0.83 0.00
82_G 46_I 0.83 0.00
50_L 106_G 0.83 0.00
121_S 85_L 0.83 0.00
46_D 293_P 0.83 0.00
135_Q 192_V 0.82 0.00
28_V 185_Y 0.82 0.00
167_R 46_I 0.81 0.00
69_K 180_V 0.81 0.00
163_D 74_V 0.81 0.00
21_N 217_I 0.80 0.00
178_R 311_G 0.80 0.00
102_R 316_M 0.80 0.00
26_M 295_L 0.80 0.00
20_F 188_E 0.80 0.00
57_L 187_V 0.80 0.00
73_S 31_L 0.79 0.00
173_F 173_V 0.79 0.00
103_L 208_N 0.79 0.00
102_R 92_V 0.79 0.00
1_M 131_C 0.79 0.00
36_L 285_T 0.79 0.00
79_I 287_V 0.79 0.00
65_P 178_S 0.78 0.00
146_V 91_R 0.78 0.00
172_A 69_S 0.78 0.00
26_M 64_V 0.78 0.00
125_R 311_G 0.78 0.00
25_V 200_K 0.78 0.00
147_D 146_V 0.78 0.00
27_Q 79_L 0.78 0.00
40_V 62_D 0.78 0.00
167_R 314_L 0.77 0.00
38_M 266_S 0.77 0.00
85_I 155_A 0.77 0.00
93_G 318_L 0.77 0.00
105_T 57_T 0.77 0.00
164_E 136_E 0.77 0.00
16_L 180_V 0.76 0.00
50_L 52_P 0.76 0.00
14_K 211_I 0.76 0.00
166_G 138_A 0.76 0.00
38_M 288_E 0.76 0.00
31_V 189_A 0.76 0.00
143_Y 189_A 0.75 0.00
69_K 59_V 0.75 0.00
87_C 284_R 0.75 0.00
30_R 124_V 0.75 0.00
61_S 82_L 0.75 0.00
56_D 37_H 0.75 0.00
159_T 285_T 0.75 0.00
93_G 155_A 0.75 0.00
67_I 129_V 0.75 0.00
106_I 227_Q 0.75 0.00
102_R 250_D 0.75 0.00
172_A 305_D 0.74 0.00
24_S 107_I 0.74 0.00
24_S 91_R 0.74 0.00
154_I 57_T 0.74 0.00
142_D 131_C 0.73 0.00
64_K 140_I 0.73 0.00
154_I 14_V 0.73 0.00
30_R 59_V 0.73 0.00
155_T 282_V 0.73 0.00
105_T 21_S 0.73 0.00
1_M 142_M 0.73 0.00
41_G 260_L 0.73 0.00
1_M 295_L 0.73 0.00
105_T 301_T 0.73 0.00
157_T 251_P 0.72 0.00
147_D 271_K 0.72 0.00
69_K 284_R 0.72 0.00
118_S 71_K 0.72 0.00
173_F 129_V 0.72 0.00
82_G 155_A 0.72 0.00
102_R 290_L 0.72 0.00
146_V 138_A 0.72 0.00
79_I 82_L 0.72 0.00
132_V 97_E 0.71 0.00
49_L 8_F 0.71 0.00
171_A 123_I 0.71 0.00
147_D 314_L 0.71 0.00
50_L 95_K 0.71 0.00
31_V 91_R 0.71 0.00
128_Y 309_S 0.71 0.00
11_E 132_H 0.71 0.00
16_L 90_V 0.71 0.00
146_V 208_N 0.70 0.00
38_M 35_F 0.70 0.00
38_M 284_R 0.70 0.00
72_K 102_L 0.70 0.00
174_D 26_V 0.70 0.00
74_V 54_C 0.70 0.00
69_K 105_S 0.70 0.00
56_D 80_E 0.70 0.00
75_A 128_H 0.70 0.00
135_Q 106_G 0.70 0.00
152_L 97_E 0.70 0.00
154_I 210_T 0.70 0.00
150_R 293_P 0.69 0.00
147_D 8_F 0.69 0.00
148_R 195_R 0.69 0.00
139_P 209_G 0.69 0.00
171_A 176_C 0.69 0.00
67_I 172_L 0.69 0.00
65_P 111_T 0.69 0.00
107_A 154_P 0.69 0.00
146_V 132_H 0.69 0.00
142_D 117_H 0.69 0.00
69_K 263_T 0.68 0.00
118_S 16_I 0.68 0.00
51_D 97_E 0.68 0.00
78_K 60_E 0.68 0.00
85_I 96_D 0.68 0.00
68_T 90_V 0.68 0.00
20_F 301_T 0.68 0.00
154_I 301_T 0.68 0.00
163_D 139_S 0.68 0.00
159_T 313_S 0.68 0.00
102_R 37_H 0.68 0.00
111_I 90_V 0.68 0.00
95_R 97_E 0.67 0.00
26_M 178_S 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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