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OPENSEQ.org
L28 - S16
UniProt: P60494 - Q5SJH3
Length: 186
Sequences: 1028
Seq/Len: 6.85
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d1 3v2eP 3v2f1Contact Map
2j002j00P 2j011 2j02P 2j031Contact Map
4juw4juwP 4jux1Contact Map
4kix4kixX 4kiyP 4kizX 4kj0P 4kj1X 4kj2P 4kj3X 4kj4PContact Map
4kj54kj5X 4kj6P 4kj7X 4kj8P 4kj9X 4kjaP 4kjbX 4kjcPContact Map
3uyd3uydS 3uyeZ 3uyfS 3uygZContact Map
4gd13r8sX 3r8tX 4gd1P 4gd2PContact Map
3ohc3ohcP 3ohdP 3ohj1 3ohk1Contact Map
3knh3knhP 3kni1 3knjP 3knk1Contact Map
3ohy3ohyP 3ohz1 3oi0P 3oi11Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
49_V 39_Y 0.85 0.00
40_R 40_D 0.81 0.00
42_Q 14_N 0.78 0.00
42_Q 40_D 0.68 0.00
49_V 69_T 0.66 0.00
4_V 2_V 0.65 0.00
2_S 52_D 0.63 0.00
65_S 18_R 0.61 0.00
70_V 31_K 0.61 0.00
62_V 46_P 0.60 0.00
69_K 39_Y 0.60 0.00
57_E 67_T 0.59 0.00
46_L 56_A 0.58 0.00
19_Q 22_T 0.58 0.00
44_P 55_R 0.56 0.00
48_K 67_T 0.56 0.00
64_A 66_P 0.55 0.00
57_E 69_T 0.55 0.00
74_V 21_V 0.55 0.00
62_V 47_D 0.54 0.00
52_R 1_M 0.54 0.00
67_I 18_R 0.54 0.00
46_L 67_T 0.53 0.00
21_R 40_D 0.53 0.00
35_T 27_K 0.52 0.00
11_R 68_D 0.52 0.00
44_P 7_A 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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