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OPENSEQ.org
L28 - S11
UniProt: P60494 - P80376
Length: 227
Sequences: 744
Seq/Len: 3.90
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2d1 3v2eK 3v2f1Contact Map
2j002j00K 2j011 2j02K 2j031Contact Map
4juw4juwK 4jux1Contact Map
4kix4kixX 4kiyK 4kizX 4kj0K 4kj1X 4kj2K 4kj3X 4kj4KContact Map
4kj54kj5X 4kj6K 4kj7X 4kj8K 4kj9X 4kjaK 4kjbX 4kjcKContact Map
3uyd3uydN 3uyeZ 3uyfN 3uygZContact Map
4gd13r8sX 3r8tX 4gd1K 4gd2KContact Map
3knh3knhK 3kni1 3knjK 3knk1Contact Map
3ohc3ohcK 3ohdK 3ohj1 3ohk1Contact Map
3ohy3ohyK 3ohz1 3oi0K 3oi11Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_A 50_Y 1.00 0.01
40_R 11_K 0.94 0.01
61_R 33_T 0.94 0.01
17_S 69_A 0.93 0.01
3_K 66_L 0.89 0.01
70_V 20_Y 0.88 0.01
37_I 64_A 0.87 0.01
5_C 119_C 0.86 0.01
46_L 97_A 0.85 0.01
4_V 31_T 0.85 0.01
61_R 8_K 0.84 0.01
39_K 17_G 0.81 0.01
14_V 1_M 0.79 0.01
41_R 105_V 0.78 0.01
40_R 44_S 0.78 0.01
6_E 10_V 0.77 0.01
13_I 77_M 0.76 0.01
4_V 15_A 0.75 0.01
14_V 80_V 0.75 0.01
70_V 54_R 0.74 0.01
41_R 89_A 0.73 0.01
13_I 103_L 0.72 0.01
67_I 24_S 0.72 0.01
73_L 18_R 0.71 0.01
2_S 23_A 0.71 0.01
15_A 87_T 0.71 0.01
18_I 22_H 0.70 0.01
65_S 21_I 0.69 0.01
49_V 54_R 0.69 0.01
2_S 3_K 0.69 0.01
50_R 14_V 0.68 0.01
60_F 114_V 0.68 0.01
73_L 45_G 0.67 0.01
74_V 15_A 0.67 0.01
11_R 6_S 0.66 0.01
56_Q 40_I 0.64 0.01
12_P 54_R 0.64 0.01
7_I 29_I 0.64 0.01
73_L 77_M 0.64 0.01
61_R 28_T 0.63 0.01
65_S 73_M 0.63 0.01
67_I 74_A 0.63 0.01
71_Y 45_G 0.62 0.01
53_V 21_I 0.62 0.01
16_N 116_H 0.61 0.01
17_S 20_Y 0.61 0.01
48_K 94_A 0.60 0.00
40_R 84_V 0.60 0.00
16_N 10_V 0.60 0.00
42_Q 11_K 0.60 0.00
11_R 3_K 0.60 0.00
47_Q 51_K 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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