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OPENSEQ.org
L28 - S03
UniProt: P60494 - P80372
Length: 337
Sequences: 804
Seq/Len: 2.90
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2d1 3v2eC 3v2f1Contact Map
2j002j00C 2j011 2j02C 2j031Contact Map
4juw4juwC 4jux1Contact Map
4kix4kixX 4kiyC 4kizX 4kj0C 4kj1X 4kj2C 4kj3X 4kj4CContact Map
4kj54kj5X 4kj6C 4kj7X 4kj8C 4kj9X 4kjaC 4kjbX 4kjcCContact Map
3uyd3uydF 3uyeZ 3uyfF 3uygZContact Map
4gd13r8sX 3r8tX 4gd1C 4gd2CContact Map
3ohc3ohcC 3ohdC 3ohj1 3ohk1Contact Map
3knh3knhC 3kni1 3knjC 3knk1Contact Map
3f1e3f1eC 3f1f1 3f1gC 3f1h1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_R 50_A 1.07 0.02
47_Q 173_V 1.07 0.02
20_R 162_Q 1.02 0.01
36_G 79_R 0.94 0.01
68_P 137_A 0.88 0.01
52_R 106_V 0.87 0.01
38_S 120_V 0.86 0.01
44_P 69_H 0.85 0.01
12_P 196_L 0.85 0.01
2_S 109_P 0.84 0.01
4_V 31_H 0.81 0.01
36_G 106_V 0.78 0.01
20_R 120_V 0.78 0.01
48_K 51_G 0.78 0.01
11_R 43_L 0.78 0.01
37_I 198_V 0.78 0.01
68_P 72_K 0.76 0.01
56_Q 91_L 0.76 0.01
20_R 168_A 0.76 0.01
2_S 33_L 0.76 0.01
47_Q 186_F 0.75 0.01
61_R 153_V 0.75 0.01
67_I 35_E 0.74 0.01
4_V 10_F 0.74 0.01
18_I 152_I 0.74 0.01
39_K 210_G 0.74 0.01
59_T 154_S 0.73 0.01
67_I 10_F 0.72 0.01
3_K 182_I 0.72 0.01
13_I 37_Q 0.72 0.01
57_E 158_G 0.72 0.01
46_L 185_G 0.71 0.01
18_I 122_E 0.70 0.01
4_V 93_K 0.70 0.01
59_T 32_L 0.69 0.01
62_V 25_G 0.69 0.01
10_K 34_L 0.68 0.01
38_S 12_L 0.67 0.01
69_K 56_D 0.67 0.01
4_V 149_A 0.66 0.01
10_K 45_K 0.65 0.01
44_P 117_A 0.65 0.01
41_R 6_H 0.65 0.01
44_P 126_R 0.65 0.01
52_R 88_R 0.64 0.01
39_K 163_A 0.64 0.01
21_R 158_G 0.64 0.00
58_I 147_K 0.64 0.00
7_I 55_V 0.64 0.00
5_C 135_K 0.63 0.00
73_L 163_A 0.63 0.00
61_R 86_V 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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