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OPENSEQ.org
L28 - S02
UniProt: P60494 - P80371
Length: 354
Sequences: 908
Seq/Len: 3.12
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2d1 3v2eB 3v2f1Contact Map
2j002j00B 2j011 2j02B 2j031Contact Map
4juw4juwB 4jux1Contact Map
4kix4kixX 4kiyB 4kizX 4kj0B 4kj1X 4kj2B 4kj3X 4kj4BContact Map
4kj54kj5X 4kj6B 4kj7X 4kj8B 4kj9X 4kjaB 4kjbX 4kjcBContact Map
3uyd3uydE 3uyeZ 3uyfE 3uygZContact Map
4gd13r8sX 3r8tX 4gd1B 4gd2BContact Map
3ohc3ohcB 3ohdB 3ohj1 3ohk1Contact Map
3knh3knhB 3kni1 3knjB 3knk1Contact Map
3ohy3ohyB 3ohz1 3oi0B 3oi11Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
74_V 111_R 1.11 0.04
37_I 147_K 1.06 0.03
6_E 184_V 0.89 0.02
53_V 114_R 0.87 0.02
44_P 93_V 0.84 0.02
46_L 58_I 0.84 0.02
56_Q 179_K 0.83 0.02
58_I 200_I 0.83 0.01
18_I 150_S 0.82 0.01
49_V 76_Q 0.82 0.01
2_S 143_E 0.80 0.01
42_Q 34_A 0.77 0.01
62_V 141_E 0.77 0.01
10_K 181_F 0.77 0.01
57_E 78_Q 0.76 0.01
65_S 208_I 0.74 0.01
50_R 190_T 0.74 0.01
67_I 59_E 0.73 0.01
62_V 13_A 0.73 0.01
68_P 101_M 0.73 0.01
34_T 208_I 0.72 0.01
60_F 88_A 0.72 0.01
68_P 140_H 0.72 0.01
58_I 165_V 0.72 0.01
18_I 105_F 0.72 0.01
6_E 118_L 0.71 0.01
58_I 156_K 0.71 0.01
59_T 128_E 0.70 0.01
38_S 195_D 0.70 0.01
46_L 105_F 0.70 0.01
47_Q 151_G 0.68 0.01
44_P 225_A 0.68 0.01
75_E 203_G 0.67 0.01
2_S 80_I 0.67 0.01
55_G 62_A 0.66 0.01
73_L 186_A 0.66 0.01
59_T 172_I 0.65 0.01
4_V 80_I 0.65 0.01
39_K 227_G 0.65 0.01
65_S 6_T 0.64 0.01
44_P 27_K 0.64 0.01
49_V 23_R 0.64 0.01
74_V 22_K 0.64 0.01
51_V 175_R 0.64 0.01
60_F 69_L 0.64 0.01
64_A 185_I 0.64 0.01
11_R 212_Q 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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