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OPENSEQ.org
L28 - S07
UniProt: P60494 - P17291
Length: 254
Sequences: 838
Seq/Len: 3.81
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2d1 3v2eG 3v2f1Contact Map
2j002j00G 2j011 2j02G 2j031Contact Map
4juw4juwG 4jux1Contact Map
4kix4kixX 4kiyG 4kizX 4kj0G 4kj1X 4kj2G 4kj3X 4kj4GContact Map
4kj54kj5X 4kj6G 4kj7X 4kj8G 4kj9X 4kjaG 4kjbX 4kjcGContact Map
3uyd3uydJ 3uyeZ 3uyfJ 3uygZContact Map
4gd13r8sX 3r8tX 4gd1G 4gd2GContact Map
3ohc3ohcG 3ohdG 3ohj1 3ohk1Contact Map
3knh3knhG 3kni1 3knjG 3knk1Contact Map
3f1e3f1eG 3f1f1 3f1gG 3f1h1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_L 119_R 1.05 0.03
50_R 149_R 1.01 0.03
42_Q 154_Y 0.96 0.02
46_L 147_A 0.91 0.02
68_P 25_A 0.90 0.02
42_Q 152_A 0.85 0.02
36_G 156_W 0.82 0.01
4_V 130_G 0.80 0.01
9_G 143_R 0.80 0.01
44_P 30_I 0.79 0.01
35_T 141_V 0.77 0.01
38_S 38_L 0.77 0.01
48_K 149_R 0.77 0.01
39_K 43_F 0.74 0.01
17_S 108_A 0.72 0.01
6_E 101_L 0.72 0.01
20_R 28_N 0.72 0.01
3_K 68_N 0.71 0.01
44_P 99_L 0.71 0.01
36_G 30_I 0.70 0.01
69_K 154_Y 0.69 0.01
67_I 60_K 0.69 0.01
64_A 49_I 0.69 0.01
14_V 73_M 0.68 0.01
47_Q 84_N 0.68 0.01
3_K 93_P 0.67 0.01
12_P 97_Q 0.67 0.01
67_I 109_N 0.66 0.01
50_R 106_Q 0.66 0.01
11_R 29_K 0.64 0.01
67_I 55_G 0.64 0.01
18_I 43_F 0.64 0.01
47_Q 70_K 0.64 0.01
65_S 7_A 0.63 0.01
55_G 27_I 0.63 0.01
20_R 155_R 0.63 0.01
73_L 36_K 0.62 0.01
13_I 143_R 0.62 0.01
53_V 84_N 0.62 0.01
62_V 133_G 0.61 0.01
38_S 149_R 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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