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OPENSEQ.org
L27 - S06
UniProt: P60493 - Q5SLP8
Length: 186
Sequences: 1175
Seq/Len: 6.42
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2d0 3v2eF 3v2f0Contact Map
2j002j00F 2j010 2j02F 2j030Contact Map
4juw4juwF 4jux0Contact Map
4kix4kixW 4kiyF 4kizW 4kj0F 4kj1W 4kj2F 4kj3W 4kj4FContact Map
4kj54kj5W 4kj6F 4kj7W 4kj8F 4kj9W 4kjaF 4kjbW 4kjcFContact Map
3uyd3uydI 3uye3 3uyfI 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1F 4gd2FContact Map
3ohc3ohcF 3ohdF 3ohj0 3ohk0Contact Map
3knh3knhF 3kni0 3knjF 3knk0Contact Map
3ohy3ohyF 3ohz0 3oi0F 3oi10Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
60_F 69_E 0.84 0.00
66_V 37_V 0.80 0.00
10_T 41_E 0.79 0.00
7_L 59_Y 0.79 0.00
2_A 83_D 0.78 0.00
44_R 56_P 0.77 0.00
18_A 46_R 0.76 0.00
30_V 72_V 0.75 0.00
11_R 43_L 0.75 0.00
33_A 52_I 0.73 0.00
64_D 32_N 0.73 0.00
59_L 36_R 0.70 0.00
62_L 79_L 0.67 0.00
1_M 59_Y 0.66 0.00
44_R 76_A 0.66 0.00
10_T 7_N 0.66 0.00
57_F 57_Q 0.65 0.00
74_R 9_V 0.65 0.00
74_R 32_N 0.65 0.00
67_V 14_L 0.64 0.00
50_N 91_V 0.64 0.00
17_Q 45_L 0.63 0.00
11_R 30_L 0.62 0.00
46_K 25_I 0.62 0.00
13_G 43_L 0.62 0.00
11_R 45_L 0.62 0.00
30_V 63_Y 0.62 0.00
18_A 45_L 0.61 0.00
1_M 18_Q 0.61 0.00
84_L 37_V 0.61 0.00
84_L 70_D 0.60 0.00
74_R 77_R 0.60 0.00
77_R 85_V 0.59 0.00
69_F 20_A 0.59 0.00
43_T 51_P 0.59 0.00
19_K 7_N 0.59 0.00
72_R 15_D 0.58 0.00
62_L 63_Y 0.58 0.00
76_G 88_V 0.58 0.00
23_V 42_E 0.58 0.00
1_M 3_R 0.58 0.00
1_M 15_D 0.57 0.00
27_E 19_L 0.57 0.00
76_G 57_Q 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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