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OPENSEQ.org
L27 - S08
UniProt: P60493 - Q5SHQ2
Length: 223
Sequences: 1307
Seq/Len: 6.11
I_Prob: 0.07
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2d0 3v2eH 3v2f0Contact Map
2j002j00H 2j010 2j02H 2j030Contact Map
4juw4juwH 4jux0Contact Map
4kix4kixW 4kiyH 4kizW 4kj0H 4kj1W 4kj2H 4kj3W 4kj4HContact Map
4kj54kj5W 4kj6H 4kj7W 4kj8H 4kj9W 4kjaH 4kjbW 4kjcHContact Map
3uyd3uydK 3uye3 3uyfK 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1H 4gd2HContact Map
3knh3knhH 3kni0 3knjH 3knk0Contact Map
3ohc3ohcH 3ohdH 3ohj0 3ohk0Contact Map
3f1e3f1eH 3f1f0 3f1gH 3f1h0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_T 44_F 1.06 0.07
23_V 135_C 1.01 0.06
6_G 17_T 0.99 0.05
11_R 38_I 0.92 0.04
1_M 78_Q 0.89 0.04
38_V 135_C 0.88 0.04
44_R 135_C 0.86 0.03
9_S 134_I 0.77 0.03
8_G 137_V 0.75 0.02
69_F 39_L 0.75 0.02
77_R 22_E 0.74 0.02
84_L 126_K 0.72 0.02
6_G 136_E 0.71 0.02
68_E 20_Y 0.70 0.02
4_K 107_L 0.68 0.02
78_Y 134_I 0.67 0.02
2_A 100_I 0.66 0.02
73_G 79_V 0.65 0.02
38_V 105_R 0.65 0.02
10_T 6_I 0.62 0.01
3_H 85_R 0.62 0.01
6_G 9_M 0.61 0.01
46_K 34_E 0.61 0.01
60_F 61_V 0.61 0.01
10_T 56_K 0.61 0.01
35_N 127_L 0.60 0.01
25_R 105_R 0.60 0.01
73_G 44_F 0.59 0.01
82_R 99_E 0.59 0.01
82_R 123_E 0.58 0.01
41_R 136_E 0.58 0.01
20_R 113_S 0.58 0.01
51_V 10_L 0.58 0.01
57_F 66_G 0.57 0.01
3_H 9_M 0.57 0.01
37_L 58_Y 0.57 0.01
64_D 18_R 0.57 0.01
59_L 110_A 0.56 0.01
62_L 20_Y 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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