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OPENSEQ.org
L27 - S12
UniProt: P60493 - Q5SHN3
Length: 217
Sequences: 875
Seq/Len: 4.19
I_Prob: 0.62
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2d0 3v2eL 3v2f0Contact Map
2j002j00L 2j010 2j02L 2j030Contact Map
4juw4juwL 4jux0Contact Map
4kix4kixW 4kiyL 4kizW 4kj0L 4kj1W 4kj2L 4kj3W 4kj4LContact Map
4kj54kj5W 4kj6L 4kj7W 4kj8L 4kj9W 4kjaL 4kjbW 4kjcLContact Map
3uyd3uydO 3uye3 3uyfO 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1L 4gd2LContact Map
3ohc3ohcL 3ohdL 3ohj0 3ohk0Contact Map
3knh3knhL 3kni0 3knjL 3knk0Contact Map
3f1e3f1eL 3f1f0 3f1gL 3f1h0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
7_L 79_V 1.38 0.62
38_V 52_V 1.25 0.51
6_G 21_V 1.10 0.37
30_V 19_S 1.08 0.34
1_M 70_E 0.97 0.25
72_R 111_K 0.93 0.22
72_R 40_V 0.89 0.19
41_R 21_V 0.87 0.18
11_R 34_C 0.87 0.18
57_F 70_E 0.87 0.18
29_Q 15_V 0.86 0.17
23_V 52_V 0.86 0.17
6_G 65_A 0.83 0.15
83_P 13_E 0.81 0.14
66_V 105_A 0.81 0.14
44_R 8_V 0.81 0.14
32_R 14_K 0.81 0.14
6_G 38_R 0.80 0.13
38_V 38_R 0.79 0.13
68_E 24_L 0.79 0.13
45_F 30_R 0.79 0.13
77_R 18_K 0.78 0.12
27_E 105_A 0.77 0.12
3_H 40_V 0.77 0.12
74_R 2_P 0.76 0.11
10_T 108_K 0.75 0.11
53_M 53_A 0.75 0.11
75_L 70_E 0.73 0.10
45_F 11_G 0.72 0.09
84_L 15_V 0.72 0.09
62_L 13_E 0.71 0.09
75_L 105_A 0.71 0.09
47_P 17_K 0.71 0.09
64_D 122_P 0.71 0.09
30_V 30_R 0.71 0.09
31_V 101_V 0.70 0.09
7_L 5_N 0.70 0.08
27_E 52_V 0.69 0.08
10_T 5_N 0.69 0.08
77_R 113_S 0.69 0.08
21_L 21_V 0.68 0.08
78_Y 13_E 0.68 0.08
11_R 94_R 0.68 0.08
47_P 65_A 0.68 0.08
73_G 8_V 0.67 0.07
78_Y 82_I 0.67 0.07
45_F 64_T 0.67 0.07
75_L 111_K 0.67 0.07
38_V 58_T 0.67 0.07
1_M 59_S 0.67 0.07
8_G 122_P 0.66 0.07
30_V 108_K 0.65 0.07
77_R 109_D 0.64 0.06
77_R 64_T 0.63 0.06
29_Q 125_A 0.62 0.06
13_G 94_R 0.62 0.06
25_R 64_T 0.62 0.06
7_L 21_V 0.61 0.06
68_E 113_S 0.61 0.06
15_D 30_R 0.61 0.06
84_L 16_R 0.61 0.06
49_K 109_D 0.60 0.05
21_L 98_V 0.60 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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