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OPENSEQ.org
L27 - S02
UniProt: P60493 - P80371
Length: 341
Sequences: 1203
Seq/Len: 3.86
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2d0 3v2eB 3v2f0Contact Map
2j002j00B 2j010 2j02B 2j030Contact Map
4juw4juwB 4jux0Contact Map
4kix4kixW 4kiyB 4kizW 4kj0B 4kj1W 4kj2B 4kj3W 4kj4BContact Map
4kj54kj5W 4kj6B 4kj7W 4kj8B 4kj9W 4kjaB 4kjbW 4kjcBContact Map
3uyd3uydE 3uye3 3uyfE 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1B 4gd2BContact Map
3knh3knhB 3kni0 3knjB 3knk0Contact Map
3ohc3ohcB 3ohdB 3ohj0 3ohk0Contact Map
3ohy3ohyB 3ohz0 3oi0B 3oi10Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_T 142_L 0.94 0.01
10_T 184_V 0.91 0.01
46_K 101_M 0.89 0.01
44_R 178_R 0.88 0.01
6_G 130_R 0.87 0.01
67_V 183_P 0.82 0.01
37_L 118_L 0.80 0.01
37_L 181_F 0.80 0.01
74_R 48_M 0.79 0.01
38_V 140_H 0.76 0.00
37_L 56_R 0.74 0.00
27_E 140_H 0.74 0.00
6_G 34_A 0.74 0.00
32_R 179_K 0.74 0.00
12_N 107_T 0.71 0.00
62_L 160_D 0.71 0.00
68_E 120_A 0.71 0.00
46_K 22_K 0.70 0.00
7_L 50_E 0.69 0.00
30_V 128_E 0.69 0.00
60_F 141_E 0.69 0.00
47_P 192_S 0.69 0.00
79_V 159_P 0.69 0.00
8_G 200_I 0.68 0.00
7_L 187_L 0.66 0.00
6_G 187_L 0.65 0.00
11_R 95_Q 0.65 0.00
7_L 105_F 0.65 0.00
7_L 200_I 0.64 0.00
57_F 34_A 0.64 0.00
37_L 114_R 0.63 0.00
19_K 141_E 0.62 0.00
76_G 82_R 0.62 0.00
49_K 120_A 0.62 0.00
67_V 186_A 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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