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OPENSEQ.org
L20 - S06
UniProt: P60491 - Q5SLP8
Length: 219
Sequences: 1092
Seq/Len: 5.06
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dU 3v2eF 3v2fUContact Map
2j002j00F 2j01U 2j02F 2j03UContact Map
4juw4juwF 4juxUContact Map
4kix4kixQ 4kiyF 4kizQ 4kj0F 4kj1Q 4kj2F 4kj3Q 4kj4FContact Map
4kj54kj5Q 4kj6F 4kj7Q 4kj8F 4kj9Q 4kjaF 4kjbQ 4kjcFContact Map
3uyd3uydI 3uye1 3uyfI 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1F 4gd2FContact Map
3ohc3ohcF 3ohdF 3ohjU 3ohkUContact Map
3knh3knhF 3kniU 3knjF 3knkUContact Map
3ohy3ohyF 3ohzU 3oi0F 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
109_L 90_V 1.02 0.03
100_V 83_D 0.87 0.02
30_K 88_V 0.87 0.02
30_K 27_Q 0.83 0.02
14_H 16_Q 0.80 0.02
109_L 89_M 0.78 0.01
79_F 76_A 0.78 0.01
78_T 74_D 0.78 0.01
73_G 62_W 0.76 0.01
93_K 72_V 0.75 0.01
30_K 30_L 0.75 0.01
32_F 16_Q 0.73 0.01
88_I 93_S 0.73 0.01
27_L 80_R 0.71 0.01
85_K 66_E 0.70 0.01
51_K 27_Q 0.70 0.01
6_T 64_Q 0.69 0.01
82_G 74_D 0.68 0.01
113_A 19_L 0.68 0.01
40_F 9_V 0.68 0.01
77_S 58_G 0.68 0.01
47_Y 33_Y 0.67 0.01
10_R 22_E 0.67 0.01
42_A 74_D 0.67 0.01
24_Y 28_R 0.66 0.01
20_L 86_R 0.65 0.01
87_G 95_E 0.65 0.01
38_T 62_W 0.64 0.01
68_A 78_E 0.64 0.01
115_A 53_A 0.63 0.01
87_G 65_V 0.63 0.01
88_I 49_A 0.63 0.01
14_H 59_Y 0.62 0.01
9_V 35_A 0.62 0.01
36_R 9_V 0.62 0.01
89_E 83_D 0.62 0.01
42_A 77_R 0.62 0.01
104_Q 94_Q 0.61 0.01
91_D 55_D 0.61 0.01
14_H 27_Q 0.61 0.01
29_S 8_I 0.61 0.01
96_A 61_L 0.61 0.01
51_K 14_L 0.61 0.01
7_G 76_A 0.60 0.01
96_A 46_R 0.60 0.01
24_Y 8_I 0.59 0.01
10_R 43_L 0.59 0.01
37_E 82_R 0.59 0.01
41_A 89_M 0.58 0.01
93_K 48_L 0.58 0.01
75_N 80_R 0.58 0.01
66_N 87_R 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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