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OPENSEQ.org
L20 - S05
UniProt: P60491 - Q5SHQ5
Length: 280
Sequences: 1039
Seq/Len: 3.79
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dU 3v2eE 3v2fUContact Map
2j002j00E 2j01U 2j02E 2j03UContact Map
4juw4juwE 4juxUContact Map
4kix4kixQ 4kiyE 4kizQ 4kj0E 4kj1Q 4kj2E 4kj3Q 4kj4EContact Map
4kj54kj5Q 4kj6E 4kj7Q 4kj8E 4kj9Q 4kjaE 4kjbQ 4kjcEContact Map
3uyd3uydH 3uye1 3uyfH 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1E 4gd2EContact Map
3knh3knhE 3kniU 3knjE 3knkUContact Map
3ohc3ohcE 3ohdE 3ohjU 3ohkUContact Map
3ohy3ohyE 3ohzU 3oi0E 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_A 10_M 1.05 0.03
103_P 8_E 1.00 0.03
108_E 29_G 0.87 0.02
68_A 143_R 0.87 0.02
40_F 129_I 0.85 0.02
30_K 127_N 0.84 0.02
75_N 92_K 0.83 0.02
91_D 151_L 0.83 0.01
78_T 136_M 0.81 0.01
7_G 109_I 0.78 0.01
112_R 115_V 0.78 0.01
53_R 100_V 0.77 0.01
91_D 154_G 0.77 0.01
104_Q 71_L 0.76 0.01
32_F 61_Y 0.76 0.01
87_G 83_E 0.75 0.01
42_A 72_Q 0.75 0.01
73_G 138_A 0.74 0.01
91_D 150_R 0.74 0.01
53_R 65_N 0.74 0.01
25_W 19_M 0.73 0.01
11_R 157_H 0.73 0.01
31_S 10_M 0.73 0.01
18_L 100_V 0.72 0.01
98_L 95_A 0.72 0.01
41_A 51_V 0.72 0.01
98_L 62_A 0.71 0.01
100_V 80_I 0.71 0.01
102_E 100_V 0.70 0.01
79_F 48_A 0.70 0.01
14_H 11_I 0.68 0.01
90_V 133_Y 0.68 0.01
102_E 41_V 0.68 0.01
31_S 106_P 0.67 0.01
33_R 68_E 0.67 0.01
45_Y 51_V 0.67 0.01
74_L 41_V 0.67 0.01
73_G 150_R 0.67 0.01
79_F 158_A 0.66 0.01
73_G 17_A 0.66 0.01
43_G 19_M 0.66 0.01
80_I 27_R 0.66 0.01
109_L 9_K 0.66 0.01
74_L 38_Q 0.65 0.01
91_D 143_R 0.65 0.01
63_V 53_L 0.65 0.01
36_R 24_R 0.64 0.01
110_V 69_V 0.64 0.01
73_G 100_V 0.64 0.01
52_R 138_A 0.64 0.01
71_Q 65_N 0.64 0.01
91_D 52_P 0.64 0.01
2_P 116_T 0.63 0.01
108_E 8_E 0.63 0.01
90_V 3_E 0.63 0.01
100_V 36_D 0.62 0.01
30_K 126_R 0.62 0.01
25_W 120_T 0.62 0.01
38_T 29_G 0.62 0.01
11_R 86_A 0.62 0.01
14_H 127_N 0.62 0.01
78_T 119_L 0.61 0.01
103_P 13_I 0.61 0.01
109_L 4_T 0.61 0.01
53_R 5_D 0.61 0.01
71_Q 11_I 0.61 0.01
57_F 28_F 0.61 0.01
49_H 119_L 0.61 0.01
41_A 131_I 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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