May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L20 - S17
UniProt: P60491 - Q5SHP7
Length: 223
Sequences: 1152
Seq/Len: 5.79
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dU 3v2eQ 3v2fUContact Map
2j002j00Q 2j01U 2j02Q 2j03UContact Map
4juw4juwQ 4juxUContact Map
4kix4kixQ 4kiyQ 4kizQ 4kj0Q 4kj1Q 4kj2Q 4kj3Q 4kj4QContact Map
4kj54kj5Q 4kj6Q 4kj7Q 4kj8Q 4kj9Q 4kjaQ 4kjbQ 4kjcQContact Map
3uyd3uydT 3uye1 3uyfT 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1Q 4gd2QContact Map
3ohc3ohcQ 3ohdQ 3ohjU 3ohkUContact Map
3knh3knhQ 3kniU 3knjQ 3knkUContact Map
3ohy3ohyQ 3ohzU 3oi0Q 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
93_K 7_T 0.96 0.01
20_L 32_Y 0.86 0.01
73_G 18_T 0.76 0.01
94_N 7_T 0.72 0.01
53_R 82_M 0.70 0.01
27_L 51_Y 0.70 0.01
83_L 53_L 0.68 0.01
19_K 48_E 0.68 0.01
47_Y 16_Q 0.65 0.01
87_G 31_L 0.63 0.01
14_H 3_K 0.62 0.01
24_Y 31_L 0.62 0.01
83_L 66_S 0.61 0.01
41_A 33_G 0.60 0.01
40_F 35_V 0.60 0.01
51_K 60_I 0.60 0.01
80_I 40_K 0.59 0.01
12_R 30_P 0.59 0.01
109_L 24_E 0.59 0.01
42_A 72_R 0.57 0.01
6_T 26_Q 0.57 0.01
2_P 43_L 0.57 0.01
112_R 18_T 0.57 0.01
6_T 37_K 0.57 0.01
9_V 52_K 0.56 0.01
75_N 1_M 0.56 0.01
59_R 23_V 0.56 0.01
88_I 34_K 0.56 0.01
17_I 26_Q 0.56 0.00
18_L 75_R 0.56 0.00
117_Q 48_E 0.55 0.00
2_P 27_F 0.55 0.00
15_K 40_K 0.55 0.00
22_K 35_V 0.55 0.00
15_K 25_R 0.53 0.00
52_R 59_I 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3947 seconds.