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OPENSEQ.org
L20 - S11
UniProt: P60491 - P80376
Length: 247
Sequences: 1085
Seq/Len: 4.45
I_Prob: 0.55
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dU 3v2eK 3v2fUContact Map
2j002j00K 2j01U 2j02K 2j03UContact Map
4juw4juwK 4juxUContact Map
4kix4kixQ 4kiyK 4kizQ 4kj0K 4kj1Q 4kj2K 4kj3Q 4kj4KContact Map
4kj54kj5Q 4kj6K 4kj7Q 4kj8K 4kj9Q 4kjaK 4kjbQ 4kjcKContact Map
3uyd3uydN 3uye1 3uyfN 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1K 4gd2KContact Map
3ohc3ohcK 3ohdK 3ohjU 3ohkUContact Map
3knh3knhK 3kniU 3knjK 3knkUContact Map
3f1e3f1eK 3f1fU 3f1gK 3f1hUContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_A 9_K 1.33 0.55
38_T 93_Q 1.13 0.36
6_T 59_Y 1.03 0.27
44_N 105_V 1.00 0.25
32_F 29_I 0.99 0.24
43_G 31_T 0.95 0.21
11_R 6_S 0.94 0.20
115_A 6_S 0.91 0.18
80_I 67_D 0.90 0.17
83_L 100_A 0.88 0.16
16_K 56_G 0.84 0.14
25_W 51_K 0.83 0.14
90_V 23_A 0.82 0.13
33_R 28_T 0.82 0.13
7_G 18_R 0.79 0.12
42_A 23_A 0.79 0.12
56_D 94_A 0.79 0.11
56_D 8_K 0.77 0.11
16_K 114_V 0.74 0.10
70_R 33_T 0.74 0.09
59_R 97_A 0.74 0.09
91_D 15_A 0.73 0.09
115_A 4_K 0.72 0.09
57_F 109_V 0.72 0.09
65_I 62_Q 0.71 0.08
75_N 113_P 0.71 0.08
33_R 56_G 0.70 0.08
94_N 71_K 0.70 0.08
110_V 9_K 0.70 0.08
93_K 115_P 0.69 0.07
37_E 79_S 0.69 0.07
109_L 21_I 0.69 0.07
30_K 20_Y 0.69 0.07
103_P 99_Q 0.68 0.07
65_I 113_P 0.68 0.07
117_Q 107_S 0.68 0.07
91_D 63_L 0.68 0.07
36_R 33_T 0.68 0.07
9_V 83_I 0.68 0.07
48_A 74_A 0.68 0.07
56_D 51_K 0.67 0.07
24_Y 107_S 0.67 0.07
10_R 83_I 0.67 0.07
4_A 11_K 0.67 0.07
32_F 125_F 0.67 0.07
35_A 61_A 0.66 0.07
82_G 34_D 0.66 0.06
73_G 77_M 0.66 0.06
109_L 69_A 0.65 0.06
81_H 78_Q 0.65 0.06
6_T 6_S 0.64 0.06
97_D 53_S 0.64 0.06
68_A 69_A 0.64 0.06
101_R 59_Y 0.64 0.06
40_F 95_I 0.64 0.06
10_R 23_A 0.64 0.06
14_H 31_T 0.63 0.06
40_F 81_D 0.63 0.06
47_Y 29_I 0.63 0.06
41_A 18_R 0.62 0.05
71_Q 122_K 0.62 0.05
15_K 5_P 0.62 0.05
42_A 82_V 0.62 0.05
77_S 106_K 0.62 0.05
88_I 80_V 0.62 0.05
94_N 13_Q 0.62 0.05
37_E 9_K 0.61 0.05
12_R 18_R 0.61 0.05
101_R 81_D 0.61 0.05
72_H 77_M 0.60 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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