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OPENSEQ.org
L20 - S02
UniProt: P60491 - P80371
Length: 374
Sequences: 1231
Seq/Len: 3.57
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dU 3v2eB 3v2fUContact Map
2j002j00B 2j01U 2j02B 2j03UContact Map
4juw4juwB 4juxUContact Map
4kix4kixQ 4kiyB 4kizQ 4kj0B 4kj1Q 4kj2B 4kj3Q 4kj4BContact Map
4kj54kj5Q 4kj6B 4kj7Q 4kj8B 4kj9Q 4kjaB 4kjbQ 4kjcBContact Map
3uyd3uydE 3uye1 3uyfE 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1B 4gd2BContact Map
3ohc3ohcB 3ohdB 3ohjU 3ohkUContact Map
3knh3knhB 3kniU 3knjB 3knkUContact Map
3f1e3f1eB 3f1fU 3f1gB 3f1hUContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_T 140_H 1.07 0.03
73_G 147_K 0.86 0.02
29_S 208_I 0.86 0.02
103_P 178_R 0.83 0.02
96_A 148_Y 0.83 0.02
14_H 40_H 0.82 0.02
91_D 167_P 0.82 0.02
87_G 65_G 0.81 0.01
43_G 88_A 0.80 0.01
94_N 167_P 0.79 0.01
91_D 164_V 0.78 0.01
24_Y 197_V 0.78 0.01
6_T 91_P 0.78 0.01
40_F 34_A 0.77 0.01
25_W 116_E 0.77 0.01
98_L 178_R 0.77 0.01
98_L 64_R 0.75 0.01
51_K 144_R 0.72 0.01
12_R 113_H 0.71 0.01
93_K 84_E 0.71 0.01
25_W 88_A 0.70 0.01
28_R 68_I 0.70 0.01
40_F 118_L 0.70 0.01
25_W 47_T 0.69 0.01
41_A 30_R 0.69 0.01
52_R 82_R 0.69 0.01
10_R 223_I 0.69 0.01
6_T 188_A 0.69 0.01
13_K 158_L 0.68 0.01
11_R 140_H 0.68 0.01
8_V 101_M 0.67 0.01
117_Q 137_R 0.67 0.01
56_D 65_G 0.67 0.01
12_R 122_F 0.67 0.01
29_S 101_M 0.66 0.01
105_V 184_V 0.66 0.01
37_E 160_D 0.65 0.01
21_A 31_Y 0.64 0.01
109_L 195_D 0.64 0.01
17_I 120_A 0.64 0.01
11_R 154_L 0.64 0.01
5_K 20_E 0.63 0.01
71_Q 79_D 0.63 0.01
115_A 92_Y 0.63 0.01
34_K 179_K 0.63 0.01
9_V 105_F 0.63 0.01
98_L 47_T 0.63 0.01
102_E 122_F 0.62 0.01
8_V 22_K 0.62 0.01
33_R 67_T 0.62 0.01
98_L 63_M 0.62 0.01
7_G 115_L 0.62 0.01
91_D 6_T 0.62 0.01
14_H 140_H 0.62 0.01
74_L 41_I 0.62 0.01
75_N 5_I 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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